BAC Information

Click to search

BAC

Clone NameMSMg01-308F04
Chromosome16 (Build37)
Map Location 42,045,733 - 42,046,047
singlet/doubletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308F04.T7 (MSMg01no308_f04.b1)MSMg01-308F04.TJ (MSMg01no308_f04.g1)
ACCAG432436AG432437
length725780
length of high quality
(start - end)
321 (45 - 365)295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no308_f04.b1 PHD_FILE: MSMg01no308_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:37 2005CHROMAT_FILE: MSMg01no308_f04.g1 PHD_FILE: MSMg01no308_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTAATTATCTGACTTCAGAATATCCACTTAAATGATTTAAAGCT
GTGCTTGCTTTACATCACCACACGAGTGTGGTGCAAAAGCCTGCAGTCCC
AGCTTTTAAAAGGCAGGGACACAAGAAGGCTGTCCTTGGTGACATTTTAC
TTCTCAGATAGTAGTGGCAACAACACTAATACATAATAATTGTGATGACT
ATGATGATGATGAATAATTATTAATGTTTAAGTCATAGAGGCAAGAAAAA
TCTAATTCAAATGGAGACATGAAATACCAGCAGGTGCAGATGTTGTTAGA
ACAGGCACAAGGTATATACAGGAAGCGATCTGTCTACCAAAGGAGAGAGG
TAAATCATAGTGAACTTCCACCCTTACCTGATAAAGACTTAAATGTTAAA
CCCTTTGAATGAATTCTTCACAGTTGATGAGTTGGATACAATACTCACAT
AATGTGAAAGGGAACATTGACAGGTGACTAAGTCATGACGGCCATGGCAT
TATGAATGGATAAATATCACTATTGTAGGGATAGGCTCTTTATCATGATG
GTGATCTGTTCGAAGAATAATTTTGATCCTGGCCTGCGCTTGACTTACTC
TACCCCTTTGGCTTCTATTGAGCTTTATTGGACGATTAAAGTCCTGGTCC
CTGACGGCGGTCCTGGCCCCCCGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACTGAAATTAGAATGTTTAA
AAAAAATGAAAAATGTACACAGTGTCCCAATAGCTATCCACAAAACGTTA
CTTACAAAGAGATAAGAGATAAAAGAATAAAGCTGAAAACCCGTGAATAC
CATATTATTAATCAAGTGATCAAAGTTAACACTACAAGAAATGATATATG
AATTGGTGTCCTGTGCCAGAAGACAGGAGGCAATGAACAGACAACAGTTT
CACTTTGCAATGATGCTTACAAAGTGCAAGTCTAAACAAAAATTAGNAAG
CACAGTGAAGCATATCCTATAGCGAGAATTGAAAGATGGTAGATATGTGA
CACATACGNAAGATGTGATAGACGCTCTGGGAAAAAAGACAGGGACAGGA
AAGCTATACAACCTGATTGGAGTTGGCGTATATGGAAGCTTATTGCACTG
CCTGCCTTAATACTCCGCCCCTTATCCTGACCGATTTATTACCTTTCGCC
CCCACTACTACTCTATTCCTAAGGTATATTACCCCCTGTCTGCCCTCCAT
CCTCAATTTCCAAAGTGGGATATATCTTACTACTGTTATTACCCTCAACA
TATCGTTTTCATTCTACTGACATAATCACATATTCTATGTACCTCCTATG
GCTCTTCCCATTTATCCTCCCTTTATTAGCATTAATTATGCTCGTACCTC
CCACCTCCCCCATTATTTCAACTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_f04.b1 MSMg01no308_f04.b1 CHROMAT_FILE:
MSMg01no308_f04.b1 PHD_FILE: MSMg01no308_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:37 2005
         (321 letters)



>mm_chr16_42045529_42046248
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttaattatctgacttcagaatatccacttaaatgatttaaagctgtgcttgc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctcttaactatctgacttcagaatatccacttaaatgatttaaagctgtgcttgc 460

                                                                       
Query: 65  tttacatcaccacacgagtgtggtgcaaaagcctgcagtcccagcttttaaaaggcaggg 124
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttacatcaccagatgagtgtggtgcaaaagcctgcagtcccagcttttaaaaggcaggg 400

                                                                       
Query: 125 acacaagaaggctgtccttggtgacattttacttctcagatagtagtggcaacaacacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acacaagaaggctgtccttggtgacattttacttctcagatagtagtggcaacaacacta 340

                                                                       
Query: 185 atacataataattgtgatgactatgatgatgatgaataattattaatgtttaagtcatag 244
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 339 ata-ataataattgtgatgactatgatgatgatgaataattattaatgttaaagtcatag 281

                                                                       
Query: 245 aggcaagaaaaatctaattcaaatggagacatgaaataccagcaggtgcagatgttgtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aggcaagaaaaatctaattcaaatggagacatgaaataccagcaggtgcagatgttgtta 221

                           
Query: 305 gaacaggcacaaggta 320
           ||||||||||||||||
Sbjct: 220 gaacaggcacaaggta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)