Query= MSMg01no309_n14.b1 MSMg01no309_n14.b1 CHROMAT_FILE:
MSMg01no309_n14.b1 PHD_FILE: MSMg01no309_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:32 2005
(316 letters)
>mm_chr16_35662466_35663181
Length = 716
Score = 549 bits (284), Expect = e-161
Identities = 305/316 (96%), Gaps = 8/316 (2%)
Strand = Plus / Minus
Query: 5 gaattccataggggtgtacttctcattcttgggggtgcccccacccttgtagtgcaagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattccataggggtgtacttctcattcttgggggtgcccccacccttgtagtgcaagtg 457
Query: 65 gttaggtgtggcaggatggacaagcgtggactcctgagactggcgctggcagtgctggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gttaggtgtggcaggatggacaagcgtggactcctgagactggcgctggcagtgctggca 397
Query: 125 agacaggtacactgccaaggtcaagagcccagaaaccaggaagcaggacacaccagtgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agacaggtacactgccaaggtcaagagcccagaaaccaggaagcaggacacaccagtgac 337
Query: 185 tatcaggtggatgagattgaaccctggaggaagacaggcaggtgttgagaaaggagacct 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 336 tatcaggtggatgagattgaaccctggaggaagacaggcaggtggtgagaaaggagacct 277
Query: 245 tctgattatcttcctgggacagtaacagcttcttttat----tcccagaacacggaaaaa 300
|||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct: 276 tctgattatcttcctgggacagcaacagcttc----aagagatcccagaacacggaaaaa 221
Query: 301 ggaaaggagagaggtt 316
||||||||||||||||
Sbjct: 220 ggaaaggagagaggtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_n14.g1 MSMg01no309_n14.g1 CHROMAT_FILE:
MSMg01no309_n14.g1 PHD_FILE: MSMg01no309_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:32 2005
(510 letters)
>mm_chr16_35506307_35507213
Length = 907
Score = 882 bits (456), Expect = 0.0
Identities = 479/488 (98%), Gaps = 3/488 (0%)
Strand = Plus / Plus
Query: 23 agagacagagacagagacagagacagagagacagtgagacaaagagtctcaagacaaaga 82
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agagagagagacagagacagagacagagagacagtgagacaaagagtctcaagacaaaga 282
Query: 83 cagaatctagctgactccaactatcttcccacccaccccctccagcccaaggcctatggc 142
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 283 cagaatctagctgattccaactatcttcccacccaccccctccagcccaaggcctagggc 342
Query: 143 atggttggagatgatcaagtgtttggaatacactgtaacaagtgtgtttgtcagtgcaca 202
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 343 atggttggagatgatcaagtgtttggaatacactgtaacaaatgtgtttgtcagtgcaca 402
Query: 203 aaggaaactctctcggcattatagacaaaccgcagagcaaagtgaccaagcaagcttctg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaggaaactctctcggcattatagacaaaccgcagagcaaagtgaccaagcaagcttctg 462
Query: 263 accaaaagaagatcctgacaagtccttccaaacaccagggtgcaggaggacacctcaggg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 accaaaagaagatcctgacaagtccttccaaacaccagggtgcaggaggacacctcaggg 522
Query: 323 cctccttctctgcaccttgcttcgacagtgggcctgaggacagcatggctgggtattgag 382
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 523 cctccttctctgcaccttgcttc---agtgggcctgaggacagcatgactgggtattgag 579
Query: 383 taattaggaattcactatcggacattgattggacattcatcatagaccatttgcagggca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 taattaggaattcactatcggacattgattggacattcatcatagaccatttgcagggca 639
Query: 443 tccatctgacattccattaaggagacatcacattacagggcctagttctcaagttggcaa 502
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 640 tccatctgacattccattaaggagacatcacattacagggcctagtgctcaagttggcaa 699
Query: 503 gtgcagtt 510
||||||||
Sbjct: 700 gtgcagtt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 907
Length adjustment: 10
Effective length of query: 500
Effective length of database: 897
Effective search space: 448500
Effective search space used: 448500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
