BAC Information

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BAC

Clone NameMSMg01-311G14
Chromosome16 (Build37)
Map Location 44,403,437 - 44,553,695
singlet/doubletdoublet
Overlap geneWdr52, Boc
Upstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52
Downstream geneLOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311G14.T7 (MSMg01no311_g14.b1)MSMg01-311G14.TJ (MSMg01no311_g14.g1)
ACCAG433922AG433923
length721720
length of high quality
(start - end)		604 (46 - 649)298 (75 - 372)
definitionCHROMAT_FILE: MSMg01no311_g14.b1 PHD_FILE: MSMg01no311_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:15 2005CHROMAT_FILE: MSMg01no311_g14.g1 PHD_FILE: MSMg01no311_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,553,216 - 44,553,695)(44,403,437 - 44,403,720)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCCAGTTGCCAGAGGACATGTTGAGAAAGTAACCGGAGAGTGA
GGGGTAAGCTGACTAGAGAAAAATAACCCCAAAGAAGCCAGGGTGTGGGA
ATACACCAGAAGAGCTTTATTCTTCTCAGAAGTGAGTTTGGACAATGTTA
GCTAAGACAAAGGTAAGGAAGTGGAGCCTTCACCATTGCATCACTGAAGA
GTTTTTAGAGGGAAAAGGAGACTTTGTTTCTCTCTCAAGCCCATCAGCTT
TCTCTTGGGGATAAGAGGAAAACCCTGGTGGCACACTCCTTTAATCCCAG
CACTTGGGAGGCAGAGACAGGAAGATTGCTGTGAGTTTGAGGCCAGGCAG
GACTACATAGAGAGCACCCGCCTCAAGAAAGAGAAGAGACAGATAGACAC
AGAGAGACAGACAGAGTACAGAGTCAGAGATAGACAGAGACAGACAGACC
GACAATTAGAGAAACATGCACTTGAATGTAACATCTTGCTTGCCTGTTGC
AATTGCTCCTAGATATACAGATTTCGGCAATAGGTGTAGATGACTCTATA
ACGTCTGTCTCATAGTGGCAGGTGAAGGGAGATGTGTTTTAGGGGCAACC
AAGTCACTAAGCTTCCCAGTCACCCCCCAGCCTCCTGGGCTTCCGAGAGA
TGGTCATCACACTGGAGATGG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCTGTGGCCCAGCTAATTGACTTG
GCCCAGCCTTTTGCTATCGTTTATAATACTCTTGGGCTTTTGTCTCTAGT
CTTTCAGCTTCGTCTCAGACTTACTAGGTACTTCGGGGTGCGCTTGGCTG
TTTCTTCCCTGTTCTTCTGAAAGTCCCTCAGGCTAGTCTCTTGCGTGATT
GACACCGTGGGTTCTAAGCATGCCCATGGTTGGACATGAACTGAACGTGG
TCTTAGTCCTGAAATCTTCTCTTTTCTCAGTTCTCATTCCTCATTAGTTT
TCTCTGAATTTTTTTTTTTACCTCCCCCCCCCTATTTAATAATAAGTTGA
TTTTACTTTGAGAGAAACCACCAAAATCAAAGAGAATTACTCTGAGGGGG
GGGTGTGGCTCTTCAACCTAACCTATCAAATATTAGTTGGCGTTATGACT
GCAGTATACCAACATTCATGCTGGCGTCTTGTTTATCCTTTCTTGTTAAT
ATGTCGTAAGAGAAACAGACTTAGAAAGGAAATGGAAACAGAAATGAACT
CACAGAGAAGGCCTGATCTAATAAAATCTGTTCTTAGGAAGTTTGAATAG
AGACCATTTTACCTTTATAGCTTAAACAAGAATGTTTAGTTGCTCTGGAA
ATGGTATATAAAATTACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_g14.b1 MSMg01no311_g14.b1 CHROMAT_FILE:
MSMg01no311_g14.b1 PHD_FILE: MSMg01no311_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:15 2005
         (604 letters)



>mm_chr16_44553216_44554219
          Length = 1004

 Score =  897 bits (464), Expect = 0.0
 Identities = 476/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactccagttgccagaggacatgttgagaaagtaaccggagagtgaggggtaagc 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 gaattcactccagttgccagaggacatgttgagaaagtaactggagagtgaggggtaagc 421

                                                                       
Query: 65  tgactagagaaaaataaccccaaagaagccagggtgtgggaatacaccagaagagcttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgactagagaaaaataaccccaaagaagccagggtgtgggaatacaccagaagagcttta 361

                                                                       
Query: 125 ttcttctcagaagtgagtttggacaatgttagctaagacaaaggtaaggaagtggagcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcttctcagaagtgagtttggacaatgttagctaagacaaaggtaaggaagtggagcct 301

                                                                       
Query: 185 tcaccattgcatcactgaagagtttttagagggaaaaggagactttgtttctctctcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcaccattgcatcactgaagagtttttagagggaaaaggagactttgtttctctctcaag 241

                                                                       
Query: 245 cccatcagctttctcttggggataagaggaaaaccctggtggcacactcctttaatccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cccatcagctttctcttggggataagaggaaaaccctggtggcacactcctttaatccca 181

                                                                       
Query: 305 gcacttgggaggcagagacaggaagattgctgtgagtttgaggccaggcaggactacata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcacttgggaggcagagacaggaagattgctgtgagtttgaggccaggcaggactacata 121

                                                                       
Query: 365 gagagcacccgcctcaagaaagagaagagacagatagacacagagagacagacagagtac 424
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gagagcacccgtttcaagaaagagaagagacagatagacacagagagacagacagagtac 61

                                                                       
Query: 425 agagtcagagatagacagagacagacagaccgacaattagagaaacatgcacttgaatgt 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  agagtcagagataggcagagacagacagaccgacaattagagaaacatgcacttgaatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_g14.g1 MSMg01no311_g14.g1 CHROMAT_FILE:
MSMg01no311_g14.g1 PHD_FILE: MSMg01no311_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:15 2005
         (298 letters)



>mm_chr16_44403237_44403934
          Length = 698

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctgtggcccagctaattgacttggcccagccttttgctatcgtttataatactcttg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgtctgtggcccagctaattgacttggcccagccttttgctatcatttataatactcttg 260

                                                                       
Query: 61  ggcttttgtctctagtctttcagcttcgtctcagacttactaggtacttcggggtgcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttttgtctctagtctttcagcttcgtctcagacttactaggtacttcggggtgcgct 320

                                                                       
Query: 121 tggctgtttcttccctgttcttctgaaagtccctcaggctagtctcttgcgtgattgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctgtttcttccctgttcttctgaaagtccctcaggctagtctcttgcgtgattgaca 380

                                                                       
Query: 181 ccgtgggttctaagcatgcccatggttggacatgaactgaacgtggtcttagtcctgaaa 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtgggttctaagcaagcccatggttggacatgaactgaacgtggtcttagtcctgaaa 440

                                                       
Query: 241 tcttctcttttctcagttctcattcctcattagttttctctgaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctcttttctcagttctcattcctcattagttttctctgaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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