BAC Information

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BAC

Clone NameMSMg01-311G19
Chromosome16 (Build37)
Map Location 26,977,837 - 27,120,647
singlet/doubletdoublet
Overlap geneGm606
Upstream geneLeprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneOstn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311G19.T7 (MSMg01no311_g19.b1)MSMg01-311G19.TJ (MSMg01no311_g19.g1)
ACCAG433932AG433933
length737735
length of high quality
(start - end)		319 (46 - 364)345 (75 - 419)
definitionCHROMAT_FILE: MSMg01no311_g19.b1 PHD_FILE: MSMg01no311_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:16 2005CHROMAT_FILE: MSMg01no311_g19.g1 PHD_FILE: MSMg01no311_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,120,333 - 27,120,647)(26,977,837 - 26,978,181)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGATTCACATATATTAATGATGTTTCCATAGAGCAAACAGAGAG
TAACGAAACCAATACTGAAACATAGCTTATTTAATGCAGTCTTTCTAAAT
GCCACCACTGTTTGTTGTAGGCTTTTATAAATGTTGGTTTCTTGAGCTTT
ATTTTTAGGTGAAGAGATTAATTTTTACTTATTAAACTTCAGGCCAGCTC
AACATTGAAAGAATATTATTATATTATGATTGATTATTTAAAGTACAAGA
ACTGAGAGACCACTCTGCGCAGGAGAGCCCACGAGCCACAGAAGCAACAG
AGCTTCTTGGACAGGTTTTCTTCAGGCCTTCCTCTTCAGCCAGGAGGAAG
AGCTGAGATCCAAACCTCTGCGCATGTTACCCGCCAGAGGAAAGTGGGTC
TCCAGGGAGGGCTCTGATCCCAGGACTCAGGTGAGATTGCCATCTTGTAT
CCCTGGTCTCTCAGAGACCAGTCCATGCAGGAGAGCAAGCAGGCTGCAGA
AGCAAGAGAGCTTCTTGGTCAGGGGCCCTTTGGGCCTTCATCTTCAGCCA
GGAGGCAGAGCTGAGCTCCAGTCCTCTATGCACCTTCCTTGCCAGAGGAG
AGCTTGCCTGCAGCGAGTACTCTGACCATTGGGACTCAAGATAGAGTTGG
ACTCTCAGGAGTGCTGATAGAGGCTGACAGAATCACN

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCTGTCTTGTGTCAAAAGTCTCTC
TGGTATTTCTGACTGCAGAGTTTTGATAGTTGGCTATTTCTCCATCTCTT
CAGTGTATCAGAAGTACCCGTTCTTCAGATATTTCATAGAAAACCCTATG
AATCTATCTCTACATATTTCAATGTTCTTTTATTCATATTTTCTACTGGT
AAACTTCAACTGGAGTGGTTATATAGTTTTCCCAAACCATCCACTTGTTT
GCTAAAAGTCCATGGTAGGAATCACATCACAACATGCATTCTATTCATGC
CTCTGCGGTTTGATTCTTTTTTCTCACGCCCGCCAATTTTACCTTCTGTT
GTCTTTGATTGGGATTTTGACCCCATTATCATATAAAGCATGGCTTTTCA
GAGCTTTGCTGATTTATTTGTCTTTTGTGTTGTCCCTCTGTTGTAAGCAG
AACTTACAGTAGCACCATTATATAATGATATGTAATACACATAATGGGTG
TTACGGTAATAACTGGGCTCATCTTCATGAGATGATTATTTTGCTCAATG
ACAATATGAAACGTGTGCAAAGTTCTTACTGTAACTGAAGTTTTATTAAG
TTGCCCATGTACTAACAAGCAGTTTTCCTTTCTGTCGTCACCTGCTAAAG
CTTTTTATACAGAGGTCTGTGACTGTGTGTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_g19.b1 MSMg01no311_g19.b1 CHROMAT_FILE:
MSMg01no311_g19.b1 PHD_FILE: MSMg01no311_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:16 2005
         (319 letters)



>mm_chr16_27120129_27120847
          Length = 719

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagattcacatatattaatgatgtttccatagagcaaacagagagtaacgaaac 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 519 gaattcaagattcacatatattaatgatgtttccatagagcaaacagagattaacaaaac 460

                                                                       
Query: 65  caatactgaaacatagcttatttaatgcagtctttctaaatgccaccactgtttgttgta 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caatactgaaacatagtttatttaatgcagtctttctaaatgccaccactgtttgttgta 400

                                                                       
Query: 125 ggcttttataaatgttggtttcttgagctttatttttaggtgaagagattaatttttact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggcttttataaatgttggtttcttgagctttatttttaggtgaagagattaatttttact 340

                                                                       
Query: 185 tattaaacttcaggccagctcaacattgaaagaatattattatattatgattgattattt 244
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 339 cattaaacttcaggccagctcaacattgaaagaatattgttatattatgattgattattt 280

                                                                       
Query: 245 aaagtacaagaactgagagaccactctgcgcaggagagcccacgagccacagaagcaaca 304
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 279 aaagtacaagaactgagagaccactctgtgcaggagagcccatgagccacagaagcaaca 220

                          
Query: 305 gagcttcttggacag 319
           |||||||||||||||
Sbjct: 219 gagcttcttggacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_g19.g1 MSMg01no311_g19.g1 CHROMAT_FILE:
MSMg01no311_g19.g1 PHD_FILE: MSMg01no311_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:16 2005
         (345 letters)



>mm_chr16_26977637_26978381
          Length = 745

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctgtcttgtgtcaaaagtctctctggtatttctgactgcagagttttgatagttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ctcctgtcttgtgtcaaaagtctctctggtatttctgactgcagagttttgatagttggt 260

                                                                       
Query: 61  tatttctccatctcttcagtgtatcagaagtacccgttcttcagatatttcatagaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttctccatctcttcagtgtatcagaagtacccgttcttcagatatttcatagaaaac 320

                                                                       
Query: 121 cctatgaatctatctctacatatttcaatgttcttttattcatattttctactggtaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctatgaatctatctctacatatttcaatgttcttttattcatattttctactggtaaac 380

                                                                       
Query: 181 ttcaactggagtggttatatagttttcccaaaccatccacttgtttgctaaaagtccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaactggagtggttatatagttttcccaaaccatccacttgtttgctaaaagtccatg 440

                                                                       
Query: 241 gtaggaatcacatcacaacatgcattctattcatgcctctgcggtttgattcttttttct 300
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gtaggagtcacatcacaacatgcattctattcatgtctctgcggtttgattcttttttct 500

                                                        
Query: 301 cacgcccgccaattttaccttctgttgtctttgattgggattttg 345
           || ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgcttgccaattttaccttctgttgtctttgattgggattttg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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