MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-311H11
Chromosome	16 (Build37)
Map Location	15,638,170 - 15,638,449
singlet/doublet	singlet
Overlap gene	Prkdc
Upstream gene	Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4
Downstream gene	2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4
Link	Open Mouse BAC browser

Click to get alignment info.

name	Snai2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20583 MGI:1096393
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Efcab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66793 MGI:1914043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042737 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042737
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	LOC665653 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665653
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC385748 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385748
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	LOC100042743 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC547302 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547302
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG632352 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632352 MGI:3642962
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 245 ESTs, 10 Proteins pseudo : _no_value

name	Ube2v2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70620 MGI:1917870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665682 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665682
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 3 Proteins pseudo : _no_value

name	Mcm4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17217 MGI:103199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkdc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19090 MGI:104779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410018G20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72083 MGI:1922845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cebpd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12609 MGI:103573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310008H04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224008 MGI:1924834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043266 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043266
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 310 ESTs, 10 Proteins

name	LOC224010 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:224010
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	D16Ertd727e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623331 MGI:1289219
definition	note : DNA segment, Chr 16, ERATO Doi 727, expressed pseudo : _no_value

name	Pkp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67451 MGI:1914701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433003 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433003 MGI:3648103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 302 ESTs, 7 Proteins

name	Yars2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70120 MGI:1917370
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnm1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74006 MGI:1921256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC665743 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Fgd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224014 MGI:2183747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Snai2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476308 GeneID:20583 MGI:1096393
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : snail homolog 2 (Drosophila) transcript_id : NM_011415.2

name	Efcab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382593 GeneID:66793 MGI:1914043
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF hand calcium binding domain 1 transcript_id : NM_025769.2

name	Ube2v2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802283 GeneID:70620 MGI:1917870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2 variant 2 transcript_id : NM_023585.3

name	Mcm4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982196 GeneID:17217 MGI:103199
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : minichromosome maintenance deficient 4 homolog (S. cerevisiae) transcript_id : NM_008565.2

name	Prkdc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517705 GeneID:19090 MGI:104779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, DNA activated, catalytic polypeptide transcript_id : NM_011159.2

name	2410018G20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801811 GeneID:72083 MGI:1922845
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410018G20 gene transcript_id : NM_029354.2

name	Cebpd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110665734 GeneID:12609 MGI:103573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCAAT/enhancer binding protein (C/EBP), delta transcript_id : NM_007679.4

name	2310008H04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801762 GeneID:224008 MGI:1924834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310008H04 gene transcript_id : NM_146068.3

name	LOC100043266 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267400 GeneID:100043266
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 310 ESTs, 10 Proteins product : similar to cytochrome c transcript_id : XM_001480401.1

name	Pkp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349260 GeneID:67451 MGI:1914701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : plakophilin 2 transcript_id : NM_026163.2

name	EG433003 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267402 GeneID:433003 MGI:3648103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 302 ESTs, 7 Proteins product : predicted gene, EG433003 transcript_id : XM_484529.5

name	Yars2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930578 GeneID:70120 MGI:1917370
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tyrosyl-tRNA synthetase 2 (mitochondrial) transcript_id : NM_198246.1

name	Dnm1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061454 GeneID:74006 MGI:1921256
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynamin 1-like transcript_id : NM_001025947.1

name	Dnm1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061457 GeneID:74006 MGI:1921256
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynamin 1-like transcript_id : NM_152816.2

name	Fgd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367762 GeneID:224014 MGI:2183747
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 4 transcript_id : NM_139232.2

name	Fgd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22296594 GeneID:224014 MGI:2183747
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 4 transcript_id : NM_139233.1

name	Fgd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226238 GeneID:224014 MGI:2183747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 4 transcript_id : NM_139234.2

name	Snai2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755576 CCDS:CCDS27974.1 GeneID:20583 MGI:1096393
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045884 - regulation of survival gene product activity [Evidence IC]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0009314 - response to radiation [Evidence IDA] [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : slug, chicken homolog product : snail homolog 2 protein_id : NP_035545.1

name	Efcab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313314 CCDS:CCDS27975.1 GeneID:66793 MGI:1914043
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : EF hand calcium binding domain 1 protein_id : NP_080045.1

name	Ube2v2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543918 GeneID:70620 MGI:1917870
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin-conjugating enzyme E2 variant 2 protein_id : NP_076074.2

name	Mcm4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982197 CCDS:CCDS27977.1 GeneID:17217 MGI:103199
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IPI]; GO:0008094 - DNA-dependent ATPase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003697 - single-stranded DNA binding [Evidence IPI] GO_process : GO:0006260 - DNA replication [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006268 - DNA unwinding during replication [Evidence IPI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Mcm4(cdc21); mini chromosome maintenance deficient 4 homolog product : minichromosome maintenance complex component 4 protein_id : NP_032591.2

name	Prkdc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124517706 CCDS:CCDS27978.1 GeneID:19090 MGI:104779
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004677 - DNA-dependent protein kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP]; GO:0007420 - brain development [Evidence IGI]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IMP]; GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]; GO:0007507 - heart development [Evidence IGI]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0001756 - somitogenesis [Evidence IGI]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 note : DNA-dependent protein kinase catalytic subunit; severe combined immunodeficiency product : protein kinase, DNA activated, catalytic polypeptide protein_id : NP_035289.2

name	2410018G20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312988 CCDS:CCDS27979.1 GeneID:72083 MGI:1922845
definition	codon_start : 1 product : hypothetical protein LOC72083 protein_id : NP_083630.1

name	Cebpd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347410 GeneID:12609 MGI:103573
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : CCAAT/enhancer binding protein delta protein_id : NP_031705.3

name	2310008H04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541868 CCDS:CCDS27980.1 GeneID:224008 MGI:1924834
definition	codon_start : 1 product : hypothetical protein LOC224008 protein_id : NP_666180.2

name	LOC100043266 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267401 GeneID:100043266
definition	codon_start : 1 product : similar to cytochrome c protein_id : XP_001480451.1

name	Pkp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312960 CCDS:CCDS27981.1 GeneID:67451 MGI:1914701
definition	GO_component : GO:0005912 - adherens junction [Evidence IMP] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007507 - heart development [Evidence IMP] codon_start : 1 product : plakophilin 2 protein_id : NP_080439.1

name	EG433003 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51829956 GeneID:433003 MGI:3648103
definition	codon_start : 1 product : similar to ribosomal protein L30 protein_id : XP_484529.1

name	Yars2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930579 CCDS:CCDS27983.1 GeneID:70120 MGI:1917370
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004831 - tyrosine-tRNA ligase activity [Evidence ISS] GO_process : GO:0006412 - protein biosynthesis [Evidence ISS] [Evidence IEA] codon_start : 1 product : tyrosyl-tRNA synthetase 2 (mitochondrial) protein_id : NP_937889.1

name	Dnm1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061455 CCDS:CCDS27984.1 GeneID:74006 MGI:1921256
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : dynamin 1-like isoform b protein_id : NP_001021118.1

name	Dnm1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061458 CCDS:CCDS27985.1 GeneID:74006 MGI:1921256
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : dynamin 1-like isoform a protein_id : NP_690029.2

name	Fgd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29336047 CCDS:CCDS27986.1 GeneID:224014 MGI:2183747
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence ISS] [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007257 - activation of JNK activity [Evidence ISS]; GO:0030032 - lamellipodium biogenesis [Evidence IDA]; GO:0030035 - microspike biogenesis [Evidence IDA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : isoform alpha is encoded by transcript variant alpha; frabin; Fgd1-related F-actin-binding protein product : FYVE, RhoGEF and PH domain containing 4 isoform alpha protein_id : NP_631978.1

name	Fgd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22296595 GeneID:224014 MGI:2183747
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence ISS] [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007257 - activation of JNK activity [Evidence ISS]; GO:0030032 - lamellipodium biogenesis [Evidence IDA]; GO:0030035 - microspike biogenesis [Evidence IDA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : isoform beta is encoded by transcript variant beta; frabin; Fgd1-related F-actin-binding protein product : FYVE, RhoGEF and PH domain containing 4 isoform beta protein_id : NP_631979.1

name	Fgd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22296599 GeneID:224014 MGI:2183747
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence ISS] [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007257 - activation of JNK activity [Evidence ISS]; GO:0030032 - lamellipodium biogenesis [Evidence IDA]; GO:0030035 - microspike biogenesis [Evidence IDA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : isoform gamma is encoded by transcript variant gamma; frabin; Fgd1-related F-actin-binding protein product : FYVE, RhoGEF and PH domain containing 4 isoform gamma protein_id : NP_631980.1

name	LOC665653 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665653
definition	number : 1 pseudo : _no_value

name	LOC385748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385748
definition	number : 1 pseudo : _no_value

name	LOC385748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385748
definition	number : 2 pseudo : _no_value

name	LOC385748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385748
definition	number : 3 pseudo : _no_value

name	LOC100042743 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042743
definition	number : 2 pseudo : _no_value

name	LOC100042743 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042743
definition	number : 1 pseudo : _no_value

name	LOC547302 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547302
definition	number : 1 pseudo : _no_value

name	LOC224010 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:224010
definition	number : 1 pseudo : _no_value

name	LOC100042737 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267282 GeneID:100042737
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) pseudo : _no_value transcript_id : XR_033852.1

name	EG632352 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94400078 GeneID:632352 MGI:3642962
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 245 ESTs, 10 Proteins product : predicted gene, EG632352 pseudo : _no_value transcript_id : XR_001767.1

name	LOC665682 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267395 GeneID:665682
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 3 Proteins product : similar to Translocase of outer mitochondrial membrane 20 homolog (yeast) pseudo : _no_value transcript_id : XR_034669.1

name	LOC665743 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267283 GeneID:665743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to glyceraldehyde-3-phosphate-dehydrogenase pseudo : _no_value transcript_id : XR_033879.1

clone name	MSMg01-081P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332E19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-401P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279G16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-144F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466C04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533D12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-120N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380N21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-311H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089D23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-233O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477K13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-155F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116E12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-311H11.T7 (MSMg01no311_h11.b1)	MSMg01-311H11.TJ (MSMg01no311_h11.g1)
ACC	AG433961	AG433962
length	728	730
length of high quality (start - end)	320 (46 - 365)	291 (77 - 367)
definition	CHROMAT_FILE: MSMg01no311_h11.b1 PHD_FILE: MSMg01no311_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:19 2005	CHROMAT_FILE: MSMg01no311_h11.g1 PHD_FILE: MSMg01no311_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:19 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCAATAAGATAGACTCCAACAACCCAAATAACCCATTGAAAAATGGG GCACAGAGCTAAACAGAATTCTCAACAGAGGAATCTCAAATGACCAAGAA GCACTTAAAGAAGTGTTCAACATCCTTAGTCATCAGGGAAATGTAAATCA AAATGACTCTGAGATGCCATCTTACTACTTTCAGAATGGCTAAGATCAAA AACTCAAGTGACTATACATGCTGGCAAGGAAGTGAAGCAAGGGGAACACT CCTCCATTGCTGGTGGGAGTGCAAACTTGGACAACCACTTTAGAAACCAA TTTGGCAGTTTCTTTTTATTTCTGCCCCCCCCTCTACATCAAGACCGAGC AATACCACTCCTGAGCATACACCCAAAAGAAAAAAAACATCCCACGGAGA GGCTTGCTCAACTATGCTCACAGCACCTTAATTCACAATAGCCAGAAACA GGAAACAACCTAGATGTCTCTCAACTGAAGAATGGATAAAGAAACTATGG TATATCTACACAATGGAATACTATCTAGCTACTAAAAACAAAGAAATCAT GAACTTTGTAGGCAAATGAATGGAACCTGAGAATACCACCTGAGTGAGGT AACCCAGACCCAAAAGTACAAGCATGGTATGTATTCACTTATAAGTGCAT ATTAGCCATAAAATACCTGATAGTCCCC	CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCATGACTTTCATTAATTTCTGCAA TTATTCTGAAAACATGGTACAACGAAAAAAAAAAGGATTTTTGTCAAGGT CCTATTGAGTTCAAGCGAGTTTACTCCGGAAGAAAATACTTCCATCTTGC ACTCTCATCCAACTTGGGATAAAAATGACTACCAAACTTGGTGGTCATTT TCCAACACCTGTTTTAAAGCATCTTCCTCAGATACTAGGAAGAGAGCAGT ATACACATCTACCAATTCCATAAACTTCACGGGACGTTGACTACACGCAC CACGGAGAGACCTGTTTCTATGGACCTCACCCACCCTGCACTGCAGAGCT AGTGCTCAGCACGCACTCCTGCCCCACACTAAAAATCAACTGGTAACTGG GCGCCGGCAGCACTGCAGCGGTCTGCTGCGGACAGGAACTCCTGCAGCTG CAGGAGCCAACACCGTACGCCGGTTCCCTCCTCCGCCATCACGCCGGCAC CGCTTCGCGCATGCGCGTCTCAGCACTCTAGCCAGCTCTTCCCTGAAGGC CCAGCCGGAACTGCTCCCTTATACTCTCGCGGGGGTGGGGGGTGAAGACG CGCACCGGTCTGCAGATCTGAAGCGGTTTACTTGTGCACATCGGAATGCA AAGGGACTGAACCAGTCTAACCATGTTCAA
quality values	Open. Hide. 8 10 8 12 12 10 14 22 34 32 33 32 30 28 28 37 37 37 32 31 41 37 37 47 59 31 31 31 31 36 36 57 53 50 57 57 57 57 57 57 42 37 23 26 26 42 41 57 57 40 40 42 42 68 68 68 68 50 57 50 50 47 50 50 50 68 68 50 50 50 50 50 50 50 50 51 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 57 57 52 37 37 37 57 57 57 54 50 50 50 50 50 50 50 50 50 57 57 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 44 41 32 28 28 28 32 41 41 59 57 57 57 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 27 29 16 12 10 11 10 9 10 8 8 8 8 10 10 13 10 10 10 11 8 8 10 10 10 10 15 15 11 24 24 47 47 48 48 48 48 57 57 48 48 59 59 59 59 59 59 57 57 57 53 53 48 48 46 40 30 25 10 8 8 8 8 8 19 11 18 15 23 9 9 9 12 10 13 16 17 14 12 12 14 28 23 28 14 13 11 11 10 10 11 12 12 12 12 12 15 12 21 21 34 34 41 48 48 48 48 57 59 59 59 59 57 57 57 57 57 57 57 57 43 37 37 42 42 43 48 57 43 59 43 43 43 43 44 57 42 42 35 35 35 40 40 50 50 50 50 48 57 48 57 57 57 48 48 37 37 30 36 36 37 39 59 41 36 36 41 43 37 37 30 30 30 37 37 37 32 41 41 43 43 41 38 34 32 30 30 22 24 20 23 16 28 28 24 23 22 22 21 26 18 33 28 20 20 32 28 30 37 37 37 32 32 20 28 24 31 28 40 39 43 32 39 32 31 20 32 32 37 37 36 30 30 28 21 17 15 15 23 28 28 37 41 37 30 30 24 32 31 18 16 10 9 8 8 8 9 18 21 39 33 37 32 23 19 18 20 18 20 20 22 12 17 22 25 22 28 31 28 28 17 16 16 12 10 10 10 9 14 14 16 12 12 12 9 9 9 12 15 12 14 10 8 8 8 10 21 37 37 37 30 24 24 19 19 19 23 19 19 22 21 26 20 17 12 9 9 9 9 9 9 8 8 13 13 12 10 8 6 6 7 13 14 12 13 9 9 10 8 9 8 11 10 9 9 11 8 8 8 8 9 9 6 8 6 6 6 7 10 7	Open. Hide. 9 9 9 13 14 9 11 9 8 7 8 9 9 16 19 37 37 47 42 50 50 50 53 53 53 53 53 57 57 57 59 59 59 59 59 57 48 48 37 36 36 36 40 42 57 68 68 54 51 42 42 50 50 50 53 54 54 54 54 54 57 48 48 41 41 41 48 59 68 68 50 50 50 50 50 51 50 47 47 50 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 68 68 59 68 68 68 68 59 57 68 68 68 57 57 57 57 57 57 57 52 52 52 50 50 52 52 37 43 52 59 59 68 68 59 59 50 50 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 48 48 48 43 46 43 43 37 43 40 54 54 68 68 53 57 57 53 53 53 57 57 57 59 59 59 59 59 59 59 57 53 53 48 48 33 37 37 26 19 8 11 8 8 8 8 9 10 9 10 10 12 23 11 11 11 11 11 27 11 11 11 33 23 37 30 37 59 59 50 50 53 48 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 33 29 11 11 11 20 29 19 15 8 8 6 8 8 9 11 10 14 11 11 11 11 12 12 15 25 18 15 11 11 11 11 15 12 9 9 9 9 9 9 15 15 20 32 41 43 50 50 48 48 59 59 59 59 59 59 48 59 59 59 59 57 57 57 57 57 57 48 50 53 53 50 50 57 57 59 59 48 48 48 48 48 48 46 46 46 41 39 39 35 36 37 41 41 39 41 42 37 41 30 30 37 41 43 44 44 39 37 34 39 39 39 47 47 50 59 59 59 48 48 48 59 59 59 48 48 46 47 41 37 30 30 23 25 18 20 20 20 33 32 47 47 48 47 47 47 43 43 47 43 48 48 48 48 43 43 43 36 36 39 40 41 39 39 39 37 37 41 43 41 39 37 32 31 37 37 39 32 31 15 16 16 18 18 25 39 37 32 26 26 27 21 28 20 18 17 15 15 19 27 25 37 40 39 32 32 28 34 25 24 24 28 25 23 28 20 32 27 27 19 20 18 19 23 16 16 13 13 16 12 11 13 15 22 13 14 14 13 15 11 9 9 9 9 18 11 11 11 11 11 13 18 11 9 9 9 14 18 18 14 16 11 9 10 10 11 21 24 26 16 17 17 24 24 21 22 13 10 10 13 18 12 13 9 9 8 8 8 8 8 8 9 9 10 12 18 9 10 8 8 8 8 10 12 12 12 8 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no311_h11.g1 MSMg01no311_h11.g1 CHROMAT_FILE:
MSMg01no311_h11.g1 PHD_FILE: MSMg01no311_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:19 2005
         (291 letters)



>mm_chr16_15637970_15638656
          Length = 687

 Score =  484 bits (250), Expect = e-141
 Identities = 274/284 (96%), Gaps = 4/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgactttcattaatttctgcaattattctgaaaacatggtacaacgaaaaaaaaaagg 60
           |||||||||||||||||| ||||||||||||||||||||||| |||||    ||||||||
Sbjct: 480 catgactttcattaatttttgcaattattctgaaaacatggtgcaacg----aaaaaagg 425

                                                                       
Query: 61  atttttgtcaaggtcctattgagttcaagcgagtttactccggaagaaaatacttccatc 120
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 424 atttttgtcaaggtcctattgagttcaagcgagtttattctggaagaaaatacttccatc 365

                                                                       
Query: 121 ttgcactctcatccaacttgggataaaaatgactaccaaacttggtggtcattttccaac 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttgcactctcatccaactttggataaaaatgactaccaaacttggtggtcattttccaac 305

                                                                       
Query: 181 acctgttttaaagcatcttcctcagatactaggaagagagcagtatacacatctaccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acctgttttaaagcatcttcctcagatactaggaagagagcagtatacacatctaccaat 245

                                                       
Query: 241 tccataaacttcacgggacgttgactacacgcaccacggagaga 284
           ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 tccataaactttacgggacgttgactacacgcaccacggagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 687
Length adjustment: 9
Effective length of query: 282
Effective length of database: 678
Effective search space:   191196
Effective search space used:   191196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

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Alignment Information