BAC Information

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BAC

Clone NameMSMg01-312P16
Chromosome16 (Build37)
Map Location 54,877,988 - 54,878,274
singlet/doubletsinglet
Overlap geneLOC667927
Upstream geneLOC433027, LOC100043442, LOC100043449
Downstream geneLOC436421, Zpld1, Nfkbiz, Gm1752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P16.T7 (MSMg01no312_p16.b1)MSMg01-312P16.TJ (MSMg01no312_p16.g1)
ACCAG435044AG435045
length730729
length of high quality
(start - end)
315 (41 - 355)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no312_p16.b1 PHD_FILE: MSMg01no312_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005CHROMAT_FILE: MSMg01no312_p16.g1 PHD_FILE: MSMg01no312_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTAGCTACCAGCCCCATTTTTAAATGGGGTTACTTGATTTTCTGA
ACTACACCTTCTTGAATTCTTTATATATATTGGATATTTGTCCCCTATAT
GATTTAGGATAGGTAAAGATCCTTTACCAATCTGTTGGTGGCCTTTTTGT
CTTATTGACAGTGACTTTTGCCTTACAGAAGTTGTGCAATTTTATGAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCTATTGCTGTTCTATTC
AGGAATTTTTCTTCTGTGCCCATATCTTCGAGACTTTCCCCCACTTTCTC
CTCTAAATTTTTTTCGCNTCCGGTTCCATGTGGAGTTCCTTAATCCACTT
ACATTTGACCTCCACACAAAAAGATAAAAATGGATCAATTCGCATTCTTC
TACATGATAACCGCCAGTTGTGACAGCACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTATGTTGCTATACCAGTACCTTGCAGTTTTTATCACCATTGCTCTGTAT
TACAGTTTTAGGTTATTCAGGGTGATTCCCCCAGAGTTTCTTTTTACCTT
GTCAAGAGTTCTTGCTATTTTATAGCCCTT
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCTATAACTTTTGTTACTTTCAGAGTCC
TGACTAATACATCATTTCAATATAAGTCTAAGAGGCTAAAAGCACAAAAC
TCATAACTGAACTAAAATCTAATGGTTAATTTCATGTTATTGCTATGTTT
AATTTTGAAAATAAATAAAACCCACATGTCCAAACTTGACACAATTAAAT
TATGATGAATGGATTACAATAGACAATAGATATACTGCCTTCTTTTTTTC
AATCTTTTTAAAAAAATTTTTTAATTAGGTATTTTCCTCATTTACATTTC
CAATGCTATCCTATAAGTCCCCCCCCCCCTCCCCCAACTCACCTACCCAC
CCACTCCCACTTCTTGGCCCTGGAAAAAAATGAACTGAGGCATAGTGGGT
TTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCGGCTAGGCCATCT
TTTGATACATATGCAGCTGGAGACACGAGCTCCAGGGGGTACTGGTTAGT
TCATATTGTTGTTCCACCTATAGGGTTGCAGATCCATTTAGCTCCTTGGA
TAATTTCTCTAGTTCCTCCATTGGGGGCCCTATGATCCATCAAATAGCTG
ACTGTGAGCATCTACTTCTGTGTTTGCTAAGCCCCGGCAGAGTCTCACTA
GAGACAGCTATATCAGGGTCCTTTCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p16.g1 MSMg01no312_p16.g1 CHROMAT_FILE:
MSMg01no312_p16.g1 PHD_FILE: MSMg01no312_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:11 2005
         (287 letters)



>mm_chr16_54877788_54878474
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctataacttttgttactttcagagtcctgactaatacatcatttcaatataagtcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctataacttttgttactttcagagtcctgactaatacatcatttcaatataagtcta 260

                                                                       
Query: 61  agaggctaaaagcacaaaactcataactgaactaaaatctaatggttaatttcatgttat 120
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggctaaaagtacaaaacacataactgaactaaaatctaatggttaatttcatgttat 320

                                                                       
Query: 121 tgctatgtttaattttgaaaataaataaaacccacatgtccaaacttgacacaattaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctatgtttaattttgaaaataaataaaacccacatgtccaaacttgacacaattaaat 380

                                                                       
Query: 181 tatgatgaatggattacaatagacaatagatatactgccttctttttttcaatcttttta 240
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tatgatgaatgcattacaatagacaatagatatattgccttctttttttcaatcttttta 440

                                                          
Query: 241 aaaaaattttttaattaggtattttcctcatttacatttccaatgct 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaattttttaattaggtattttcctcatttacatttccaatgct 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)