BAC Information

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BAC

Clone NameMSMg01-313J03
Chromosome16 (Build37)
Map Location 52,351,713 - 52,418,328
singlet/doubletdoublet
Overlap geneAlcam
Upstream geneLOC627543, Cblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313J03.T7 (MSMg01no313_j03.b1)MSMg01-313J03.TJ (MSMg01no313_j03.g1)
ACCAG435459AG435460
length1,2851,248
length of high quality
(start - end)		802 (129 - 930)305 (505 - 809)
definitionCHROMAT_FILE: MSMg01no313_j03.b1 PHD_FILE: MSMg01no313_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:24 2005CHROMAT_FILE: MSMg01no313_j03.g1 PHD_FILE: MSMg01no313_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,351,713 - 52,352,514)(52,418,024 - 52,418,328)
sequence
NCCCAATTTANNNNNNNGGCATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCTTCATTCCCTAATCATCTTTATCCCATAAATAAGAA
GCTGGCACTGCTGAACTGACCTTTAGACTAAGGCTTCTCTTAGACATATA
CTCTGGTGCAGATTCAGTGCTTGTCTCGGGCAGAGACTGCATACGACTTA
AGGTTAAACCTAAACTCATCTGTAACAAGGAAAATTAACGTATCTGGAAT
CTCAATTGGCAAGAAATCTCTGATCTTTCCTTTCCTTTTCTTTTACTTAT
TTATCTTATATGTGAGATTACACTGTTGCTGTCTTCAGAAACACCAGAAT
AGGGCATTGGATCCCATTACAGATGGTTATAAGCAACCATGTGGTTGCTG
GGAATTGAACTCAGAACCTCTGGAATAGCCATCAGTGCTCTTAACTGCTG
AGCCATCTCTAGCCCCATGAGAAAGACTTCTCCCTGAGGACCTGAGAGTC
AAATACAGGTGAAAGAGGATGAAGGGAGGTCTTGGGGAAGAAAAGCAGCA
ATGGACTCAAGGACATTTCACATTGATAGATTTAAATAATCATAATTAAA
AACACAACTGGTTATTTTGTCTTTGAAATTCATGACGCCTGAATCTTAGC
TAGTCTCCCAATTGAAAGCTTTCCCTATTTTTAGAGCATGTAGATAAAAC
TCTTGCAAGACTAGGCAGAAATTCTCTTGCTTCACTGGTAACCTACTTTG
AGTCTTAGCCTAGCAGAATAATAACTGAATAAATAAATAAGTAAGCATGT
TGTATGCTGTGTTCAGAGAGATAGTATATGAGCAATTCCCTATTTAAAAT
ACCCCAATTTTAATTCAAGTAGTTTTAAAAATATAACCTATACATTTTNA
AGTTAAATTTTATGCTCCTAATTTTAATAAAAAATAAGTATTANNAGATA
CATGGAAGTTATTTCCTGAAGCAAGCTTTTCACCTATACTTTTAGAAATT
TCTTTGGACTAGATTACTGGCAAAAGCTGACCTTCCTAAAGCCCCCTTTT
CCAGAAAATAATTTAACCGGCGGGAAAATGAACCTTGGTCCCTGTGAATC
CCCATTCACAAAAAAAGGGCTTTTCTAAAAAGGCCCCTCTCCTATGTGGT
CCAAAAGAGATTTTTCTTGTGTCGAGAGGGCCCCTAAAAAAATGTGGGGG
GTTTCTTGTAAAACAAAAGGCCCGGGGTCCTAAATTCGGTCCCTCTATAA
AAATCAGGGGAAGAGGGGCGGCCTCTCTTTCCTCC

NGGTTTNNNNNNNAATGAGGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACACGTGACTGCCGATG
TAAATCCTGTTTTTAAAGTGTCTCTAACTTGTCTTCTAAAAGGGAAGCAC
TAGAATAATGAGGTTAAAGGTGTGACTCTTGCTTTTAATACTAAAATACA
ACCATTACTGGGTATCTATTTTTACATGAGATTTCATTTTCGTGCATGGG
GTGTTTTGTGTATTAGCTACCAGCAGTGGAAGAATTTACATGTCCAGAAA
GCCTTTGAAGTTAATTCTCTGTTTAGAAACAGCTGAGAGGTTGCCTATGG
TACAATGCACTTCTTGAATCTGCAGTCAGGCAAATGTGCTTCTTTCGGTC
AGCCTGCACTCGATTCTATAGATGAAAACAAAACAAAAACAACATCATCA
ACAACAAAATTTATTTAAAGACAGATCACACTCATTCCATGAAGCCAAAA
GACCTGAGGCAGCATGCCATGGTGGTGAGGAACTGAATTGTGTTTCGCAA
GTCTGTGGTTCTATTTGGTTTGCTTTCCTAAGTGAATTCAGTGCCTCGCA
GCTCATCCTCTTCACAATGTGACAGGGAGCTGACATTAGGAGGCTAACAT
CAGAATACAAATGAGGCGCTGAAAGTTGTGATTTTAACAAATAAACTCAT
GACAAAACCCAATAATATTCCCTATTCCAACTAAAGTAATGTCTGCTTTC
TTAGTTACCGAGGTGTTCATACTAGGAAGCAAGAGCTGCTTGCCACAAAT
GGCACTTTCCCTGGTTCTGTGTTTTGAACAGCAAAGGATAGACTGTTTTT
GTTTTTCCTTTCTCATTTACCATTTATCTATCTATTCGGAATATTCTTCT
TACTAATAAATATCTCCTTTATTGATTTCTCTACCTTGGTTTCCTTGGAA
AATTGATACTTCCTACCTTTTATTCCGATCAAATTCCAGAGCATGCCATG
GGTCTCTGAATTTTGTAATTATTAAAGAAATATTATAATGTATTTTAATA
CCAAACAAATTCTCCCCCTTTTTCCCTGAAGGGGGCACCAGGGGACTTCA
AGTTAAAGTTGGGGTTCCTTATGAAACTCCGGAACCCCCCCGATTTCAAA
CCCCTGGTTATATAAAAAAAATAGCCCAACAAAACAAACCCCCCCAAATG
GGAAATTCTCCCCCTGATTTCAAGCCCCTCTAGGAAGGGTGGTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_j03.b1 MSMg01no313_j03.b1 CHROMAT_FILE:
MSMg01no313_j03.b1 PHD_FILE: MSMg01no313_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:24 2005
         (802 letters)



>mm_chr16_52351513_52352714
          Length = 1202

 Score = 1537 bits (795), Expect = 0.0
 Identities = 800/802 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    taaggcttctcttagacatatactctggtgcagattcagtgcttgtctcgggcagagact 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201  taaggcttctcttagacatatactctggtgcagattcagtgcttgtctcgggcagagact 260

                                                                        
Query: 61   gcatacgacttaaggttaaacctaaactcatctgtaacaaggaaaattaacgtatctgga 120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  gcataagacttaaggttaaacctaaactcatctgtaacaaggaaaattaacgtatctgga 320

                                                                        
Query: 121  atctcaattggcaagaaatctctgatctttcctttccttttcttttacttatttatctta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  atctcaattggcaagaaatctctgatctttcctttccttttcttttacttatttatctta 380

                                                                        
Query: 181  tatgtgagattacactgttgctgtcttcagaaacaccagaatagggcattggatcccatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  tatgtgagattacactgttgctgtcttcagaaacaccagaatagggcattggatcccatt 440

                                                                        
Query: 241  acagatggttataagcaaccatgtggttgctgggaattgaactcagaacctctggaatag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441  acagatggttataagcaaccatgtggttgctgggaattgaactcagaacctctggaatag 500

                                                                        
Query: 301  ccatcagtgctcttaactgctgagccatctctagccccatgagaaagacttctccctgag 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  ccatcagtgctcttaactgctgagccatctctagccccatgagaaagacttctccctgag 560

                                                                        
Query: 361  gacctgagagtcaaatacaggtgaaagaggatgaagggaggtcttggggaagaaaagcag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  gacctgagagtcaaatacaggtgaaagaggatgaagggaggtcttggggaagaaaagcag 620

                                                                        
Query: 421  caatggactcaaggacatttcacattgatagatttaaataatcataattaaaaacacaac 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  caatggactcaaggacatttcacattgatagatttaaataatcataattaaaaacacaac 680

                                                                        
Query: 481  tggttattttgtctttgaaattcatgacgcctgaatcttagctagtctcccaattgaaag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  tggttattttgtctttgaaattcatgacgcctgaatcttagctagtctcccaattgaaag 740

                                                                        
Query: 541  ctttccctatttttagagcatgtagataaaactcttgcaagactaggcagaaattctctt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  ctttccctatttttagagcatgtagataaaactcttgcaagactaggcagaaattctctt 800

                                                                        
Query: 601  gcttcactggtaacctactttgagtcttagcctagcagaataataactgaataaataaat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  gcttcactggtaacctactttgagtcttagcctagcagaataataactgaataaataaat 860

                                                                        
Query: 661  aagtaagcatgttgtatgctgtgttcagagagatagtatatgagcaattccctatttaaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  aagtaagcatgttgtatgctgtgttcagagagatagtatatgagcaattccctatttaaa 920

                                                                        
Query: 721  ataccccaattttaattcaagtagttttaaaaatataacctatacattttnaagttaaat 780
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 921  ataccccaattttaattcaagtagttttaaaaatataacctatacattttaaagttaaat 980

                                  
Query: 781  tttatgctcctaattttaataa 802
            ||||||||||||||||||||||
Sbjct: 981  tttatgctcctaattttaataa 1002


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 802
Length of database: 1202
Length adjustment: 10
Effective length of query: 792
Effective length of database: 1192
Effective search space:   944064
Effective search space used:   944064
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no313_j03.g1 MSMg01no313_j03.g1 CHROMAT_FILE:
MSMg01no313_j03.g1 PHD_FILE: MSMg01no313_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:25 2005
         (305 letters)



>mm_chr16_52417824_52418528
          Length = 705

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggcagcatgccatggtggtgaggaactgaattgtgtttcgcaagtctgtggttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaggcagcatgccatggtggtgaggaactgaattgtgtttcgcaagtctgtggttctat 446

                                                                       
Query: 61  ttggtttgctttcctaagtgaattcagtgcctcgcagctcatcctcttcacaatgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtttgctttcctaagtgaattcagtgcctcgcagctcatcctcttcacaatgtgaca 386

                                                                       
Query: 121 gggagctgacattaggaggctaacatcagaatacaaatgaggcgctgaaagttgtgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggagctgacattaggaggctaacatcagaatacaaatgaggcgctgaaagttgtgattt 326

                                                                       
Query: 181 taacaaataaactcatgacaaaacccaataatattccctattccaactaaagtaatgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taacaaataaactcatgacaaaacccaataatattccctattccaactaaagtaatgtct 266

                                                                       
Query: 241 gctttcttagttaccgaggtgttcatactaggaagcaagagctgcttgccacaaatggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctttcttagttaccgaggtgttcatactaggaagcaagagctgcttgccacaaatggca 206

                
Query: 301 ctttc 305
           |||||
Sbjct: 205 ctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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