BAC Information

Click to search

BAC

Clone NameMSMg01-315J19
Chromosome16 (Build37)
Map Location 81,591,915 - 81,592,168
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1, EG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315J19.T7 (MSMg01no315_j19.b1)MSMg01-315J19.TJ (MSMg01no315_j19.g1)
ACCAG436205AG436206
length737752
length of high quality
(start - end)
327 (40 - 366)297 (78 - 374)
definitionCHROMAT_FILE: MSMg01no315_j19.b1 PHD_FILE: MSMg01no315_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:08 2005CHROMAT_FILE: MSMg01no315_j19.g1 PHD_FILE: MSMg01no315_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCCATGTAATACATATATATATATATATATATATATATATATATATATAT
ATATATATATATACACACACACACACACACTTGGAATTTAATTACTTCAA
GTATCTTCAGAAACTTTCTCCTATGGGAAACATTTCATCATCCAATTTCA
CACTCATATGAAATATATGCTATTTATTTGCTATTTATAGGTTATTTATT
TACCAATAGAATACTGAGACAAGAAAAATGAATACAATGGCTACATTTTA
TTTTTAACAGGGTGTATTATTACTTAAAGCTTACTTTGTATTTTATAAGG
TATTATTATGGGATGCAGCACGAGAATGTTATTCATTGAACAATATATTG
TGATAAAAACGCCCCCCCCTAGCCNCATAAAAATCAGCTTTTATTGAGAA
CGTTAAATACATAAAAAAACTATGGTATTATATTTCTATGGCGATGCTGC
ATGACCTCCTATACCTCCAAGTTTAATTCCTTGCATAAAAACAATCCCTA
AAGAGAGTTTATATTAGATGTCCCCTTTTGTATATTAAGCCACTACTGTT
CTTTACCCTGTCTGCTCCCCATTCGTTTCCCCCACCTCTATCCCCCACAT
GATTTTTGTAGCCCTTATCCAGCCTTCTCATATCTTTGTTTGCTCCCTCT
CAGTTTACTTCTCTTTCGTTTTGGCCTCCCTTCCCCT
ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAACTGAAAGGGACAGCATG
AACTCAACAAACTCTCTCTCTCTGTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTATATGCAAGTACACTGTAG
CTGTCTTCAGACACTCCACAAGAGGGCATCAGATTTCGTAACGGATGGTT
GTGAGCCAGCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAG
CAGTCAGCGCTCTTAACCACTGAGCCTTCTCAACAGCTCCTCTCTGTGGT
GTTTGTTTGTTTGTTTTTTGTCTCCCCGCCCCCCCTGCTGTTGCCCCTGT
TGTCCCTCCTCCTTTTTTGCCCCCCCCCCCCNNNNTTTNTTGNTTTNTGT
GCCTNTTTTGTNCCCCCCTTTTCCGCCCTCTCTCTTCCCTNCCCTTTCCT
CTCTCCTCTTTCCCCCCCCTCCCTCTCTTTTTTCCCCCCCCCCCTCCTTN
TCCCCCTCTCCCCCTCTTCTCCCCCCTTTTCCCTTCGCCCCGCCTCGGGN
GGGGGGNGNNGNNGGGGNGNNNGGNNGGAAAGGGCCGCCGCCGCCCCTCC
TTCCCCCTTTCTTCCTTTCTCCCCCTTTCCTCCTCCCTCCCTCCCTTCCT
TTCGTTCCCTCCCCCTCCCTACCTTTCCCTCCACTTTCCCCTTTGCTCCT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_j19.b1 MSMg01no315_j19.b1 CHROMAT_FILE:
MSMg01no315_j19.b1 PHD_FILE: MSMg01no315_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:08 2005
         (327 letters)



>mm_chr16_81591641_81592367
          Length = 727

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 74  acacacacacacacacacttggaatttaattacttcaagtatcttcagaaactttctcct 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acacacacacacacacacttggaatttaattacttcaagtatcttcagaaactttctcct 469

                                                                       
Query: 134 atgggaaacatttcatcatccaatttcacactcatatgaaatatatgctatttatttgct 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atgggaaacatttcatcatccaatttcacactcatatgaaatatatgctatttatttgct 409

                                                                       
Query: 194 atttataggttatttatttaccaatagaatactgagacaagaaaaatgaatacaatggct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atttataggttatttatttaccaatagaatactgagacaagaaaaatgaatacaatggct 349

                                                                       
Query: 254 acattttatttttaacagggtgtattattacttaaagcttactttgtattttataaggta 313
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acattttatttttaacaggttgtattattacttaaagcttactttgtattttataaggta 289

                         
Query: 314 ttattatgggatgc 327
           ||||||||||||||
Sbjct: 288 ttattatgggatgc 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)