BAC Information

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BAC

Clone NameMSMg01-315M07
Chromosome16 (Build37)
Map Location 7,524,045 - 7,524,383
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315M07.T7 (MSMg01no315_m07.b1)MSMg01-315M07.TJ (MSMg01no315_m07.g1)
ACCAG436317AG436318
length722727
length of high quality
(start - end)
368 (50 - 417)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no315_m07.b1 PHD_FILE: MSMg01no315_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:21 2005CHROMAT_FILE: MSMg01no315_m07.g1 PHD_FILE: MSMg01no315_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTACTGCCCCTGGTATTACACTATCACTTTGAGTAAAAGT
TAGGTCACTGCCCTTCACAGGAATCTACCATCACCAAGGAAGAAAGAAGT
TTCTGACCGTAGGAGAAACCAAAATAGATACTTATAATTATAGCTGAGTT
ACACCCATATACAAGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTG
GTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGAACTCC
CTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAA
AGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGCTGA
CTTTGTCTCAGTTATTCCCCCCCCCACCTCCTGCCAGTCTATGCGCTTTC
ATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGT
ACCTTGCGGGTATGTCACCCAACTTCCTTATTGTCTTCTGCATAAAAAGT
CTGATGTTCGATTTGACATTACATTCAGATCCAACACAACCTCTCCTGTG
TGCATCTGTCTGTCAATTCATCCTACGCTTTGCCCACCGGTGACTAGAGA
CACGTTCCACGCAGACCAAGGGACCCAGAGGGTCTGCGGCAGACCCTGTG
TTCCATCCAATACGTGACTGTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATAGGGATAAAGAACTGTCCT
AGAGGCATGGTGTGCTGCTCAGGGCTGGGAAGAGCAAGAAGGCAACATGA
ACAAATGCAAACAGGCTCTCCTAAAATGACAGAAGTCACTGACCTTTCTA
CTGAAGGTTCAGAGTGTAATGAAGCCAATATGGGCACCACATTCAGTCTT
TTGAGAATACAGTCAAGCTGAAAAGGCATGCTTAGACCACTCAGTGGGTC
TGCATGAAAACAGTGCTCTTCCAGCTCCAAAGAATGTTCGCACTCTATCT
CCATCAGCATACATGGCCTAAAGTATAGGAATTATTCATGGACTAGGGCA
GAAAGTATATACATACCCCCCCACCCTTTTTCTGTGTTATCTCCTAAATG
CATCAAAACCCTATATTTTTCACACATATTTGAATATTGTTATTTTAAAT
TTTACCCATAGACAACCCAAAGTCATCCATTTACTAATCCTAAATGGGAT
GTACTGGGAAACGTATGCTTTTAATGTTCTTAGTTTATACGGGGAATAAT
GAACAGGACGCATGTGTGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGCG
TGTGATCCACCAATTACATTTATTACAACTTATCCCTTTTCCCTTTCTAT
TTTTTCACTCATAGCTATCCTTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_m07.g1 MSMg01no315_m07.g1 CHROMAT_FILE:
MSMg01no315_m07.g1 PHD_FILE: MSMg01no315_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:21 2005
         (339 letters)



>mm_chr16_7523845_7524583
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatagggataaagaactgtcctagaggcatggtgtgctgctcagggctgggaagagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatagggataaagaactgtcctagaggcatggtgtgctgctcagggctgggaagagca 260

                                                                       
Query: 61  agaaggcaacatgaacaaatgcaaacaggctctcctaaaatgacagaagtcactgacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaggcaacatgaacaaatgcaaacaggctctcctaaaatgacagaagtcactgacctt 320

                                                                       
Query: 121 tctactgaaggttcagagtgtaatgaagccaatatgggcaccacattcagtcttttgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctactgaaggttcagagtgtaatgaagccaatatgggcaccacattcagtcttttgaga 380

                                                                       
Query: 181 atacagtcaagctgaaaaggcatgcttagaccactcagtgggtctgcatgaaaacagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacagtcaagctgaaaaggcatgcttagaccactcagtgggtctgcatgaaaacagtgc 440

                                                                       
Query: 241 tcttccagctccaaagaatgttcgcactctatctccatcagcatacatggcctaaagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttccagctccaaagaatgttcgcactctatctccatcagcatacatggcctaaagtat 500

                                                  
Query: 301 aggaattattcatggactagggcagaaagtatatacata 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaattattcatggactagggcagaaagtatatacata 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)