Query= MSMg01no316_d02.b1 MSMg01no316_d02.b1 CHROMAT_FILE:
MSMg01no316_d02.b1 PHD_FILE: MSMg01no316_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:53 2005
(609 letters)
>mm_chr16_84273608_84274616
Length = 1009
Score = 1019 bits (527), Expect = 0.0
Identities = 590/611 (96%), Gaps = 2/611 (0%)
Strand = Plus / Plus
Query: 1 ctcacacagccaatgtcgaacatttctaggtgtgaattgctgtgatatcacacccacatt 60
||||||||||||||||||||||||| | ||||||||||||| |||||||||| | |||||
Sbjct: 200 ctcacacagccaatgtcgaacatttttgggtgtgaattgctatgatatcacatcaacatt 259
Query: 61 gtcacataccatatacatgtcaggaattttttggcaaatctttaaaactaaagggggaga 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 gtcacataccatatacatgtcaggaatttttcggcaaatctttaaaactaaagggggaga 319
Query: 121 aggtattacttattgtaccttaataatttaaatttt-aaaaaatcaacttatagcaagtt 179
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 320 gggtattacttattgtaccttaataatttaaattttaaaaaaatcaacttattgcaagtt 379
Query: 180 acactgaattttccacaactaacctacatcatctctataccgttccttcatctgccatct 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 380 acactgaattttccacaactaacctacatcatctctatactgttccttcatctgccagct 439
Query: 240 ctcattcattcatatagacatatagaggaaaagatctctacagcatcccaaaagagcaat 299
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcactcagtcatatagacatatagaggaaaagatctctacagcatcccaaaagagcaat 499
Query: 300 gcaagcacctgccacaaggggacacccacccctcaaatcatccccgagggacatggcctg 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcaagcacctgccacagggggacacccacccctcaaatcatccccgagggacatggcctg 559
Query: 360 ctcctttcctgattgtctgccccatagatttaatacatcaaactcagcatcctcaaacat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcctttcctgattgtctgccccatagatttaatacatcaaactcagcatcctcaaacat 619
Query: 420 gacaagtgaaagacatcagaatgttttgtctatcattatattaaacccaattttatgtgt 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 gacaagtgaaagacatcagaatgttttgtctatcattagattaaacccaattttatgtgt 679
Query: 480 tagagactcagaaaaatatgcttatttcatattgcggcatcattcctcaaagttgtttaa 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 680 tagagactcagaaaaatatgcttatttcatattgcagcatcattcctcaaagttgtttaa 739
Query: 540 gtatcaaaaac-ttagactttgtttgtttgtttgtttgttgccatcaatcacattaaaaa 598
|||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 740 gtatcaaaaaaattagagtttgtttgtttgtttgtttgttgccatcaattaaattaaaaa 799
Query: 599 tagggacagca 609
|||||||||||
Sbjct: 800 tagggacagca 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_d02.g1 MSMg01no316_d02.g1 CHROMAT_FILE:
MSMg01no316_d02.g1 PHD_FILE: MSMg01no316_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:53 2005
(300 letters)
>mm_chr16_84454180_84454879
Length = 700
Score = 559 bits (289), Expect = e-164
Identities = 295/297 (99%)
Strand = Plus / Minus
Query: 1 tctcttattctcaagatgtctgccagtcttattcttagaaatagcttgttttgactagac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 644 tctcttattctcaagatgtctgccagtcttattcttagaaatagcttgttttgaatagac 585
Query: 61 ctaatgtctgtggtttatcaggattcttatgttgaagcgctaagtactgattgtgatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctaatgtctgtggtttatcaggattcttatgttgaagcgctaagtactgattgtgatggt 525
Query: 121 tttgaagagtggggccttggtagatgaggtaggctcacagtgatgggtattgccttcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttgaagagtggggccttggtagatgaggtaggctcacagtgatgggtattgccttcctt 465
Query: 181 taaaagaagggaaggaagtagacttgcaactttttgcattgtgtgatgggacagtggtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 taaaagaagggaaggaagtagacttgcaactttttgcattgtgtgatgggacagtggtgt 405
Query: 241 tggcaaatcagggatagagttgtcaccaggaattcatgatgctaacaccatgatttc 297
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggcaaatcagggagagagttgtcaccaggaattcatgatgctaacaccatgatttc 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
