BAC Information

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BAC

Clone NameMSMg01-318D20
Chromosome16 (Build37)
Map Location 10,941,611 - 11,146,587
singlet/doubletdoublet
Overlap geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
Downstream geneLOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318D20.T7 (MSMg01no318_d20.b1)MSMg01-318D20.TJ (MSMg01no318_d20.g1)
ACCAG438093AG438094
length747775
length of high quality
(start - end)		344 (82 - 425)349 (78 - 426)
definitionCHROMAT_FILE: MSMg01no318_d20.b1 PHD_FILE: MSMg01no318_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:23 2005CHROMAT_FILE: MSMg01no318_d20.g1 PHD_FILE: MSMg01no318_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,146,245 - 11,146,587)(10,941,611 - 10,941,955)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNGACAA
CGCGGAATTCTCTTAGGCCTACCGAAAACAGATGAGTGGGTACTGTGATG
TGTTCTTTAAGAGAAACTTGTACATTTCCTAGGTATCTCCCATGATGATA
TTGCTCAACAATCCAAACAATATTGGAGAAGTTTGCAAGCAAGCATGCCG
GGAGTGCAGGTAACCTCCCCTCTTCCCTGGGAGCTGGGTGCCTTCCGGAG
CTGCCTAGCTGGTGCTGGGTTTGTGATAGATTCAGGGTCATACTTGCAGT
CCTTTACTTACTGCTTATTCCATTGGTAACTCTTCTGGGAAAACATACTT
GCAGCTGGTTGATCGCCATGAACAGGCATATGGCAGCCTGTGGTATATAT
CTTCCAGCGATATAGGACACAGTTCCCCCCCCCACCTCATTTGGGAAAAC
ACTGGGTCTTGCCTTTGGCAATTCTTAGGTATGGGTAATAGGTTATGGTT
TGGAGTTTTGTGTCTGTCCTACATGATTTAAATTGCTTATCCATTGTTCT
CCTTGACCCACCCAAAAGCCACTGAGTTTCACAACTAGCTTCTCAGTTGA
GGTTTGGCATCTACAAGTCTGTAATAATTTTATCAGATGCTTTTGCATAT
TTGAGACAGTTTAGNTTAACTATCAGCATATATGTATTTGCCAAGTCATA
GAGCCAGACAACTATGCTGGTACAAAATGTATGGCGATTTTGTATGC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACATCTTGGACCACCCCCTTCCAGCC
AGGGCCTTGCCAGTCACCCTGGTCCCCTGTCACTGAGCTGCTCCCTGCAC
GGTGTCCTATGTCACCAGCATCCCAGGTCCAGCTGTGCATGCCCAGTAAC
ATCGTCTCCATTTCATTCTCACTCAAGCCAACCTGGCCTATCCTAGTCCA
CACCGCTGGACACGGCAGAGACAGCTTCACAGAGTGACTACATGGCGAGT
GGTAGTGGGCAAATTGATGAATGCATGATTATTTGAGTCTATACAGACAG
AGGCCACAGGAAGGCAAAGAGGATCTATGGTGGCAGAAGTCAAAAGAATA
ATGCCCTTAGCAGAGGTGGCCACCACCCCCTCGCCGAGGGGAGGGGGGAG
GGGGAAGTNNTNCTTNNNNTTTTTTTTTTTTTTNNTGTTNNNNTTTTGTT
NTCTTCTTTTTCTCTTCCTTCTCGCTTACTATCTCCTCCCCCCTTCTTCT
TTTTATCCTTTCTTTATTCTCATTTCTCAACACCCAAAATTTCATCTCTC
TACCCATTGATTACGTCTCTAATTTTCTAATTATTTTTACTATACCACAA
CTTATATAGATCAACTACAATCAGATCTTCTTCTTTTATTTTTTCTCTTA
TCCCATCATTATCCTCCTATTCATTCATTTTTCCAACGCTTTTCCACAAC
ATTCTTCCTAAATATTATTATTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_d20.b1 MSMg01no318_d20.b1 CHROMAT_FILE:
MSMg01no318_d20.b1 PHD_FILE: MSMg01no318_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:23 2005
         (344 letters)



>mm_chr16_11146045_11146788
          Length = 744

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagtgggtactgtgatgtgttctttaagagaaacttgtacatttcctaggtatctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atgagtgggtactgtgatgtgttctttaagagaaacttgtacatttcctaggtatctccc 484

                                                                       
Query: 61  atgatgatattgctcaacaatccaaacaatattggagaagtttgcaagcaagcatgccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgatgatattgctcaacaatccaaacaatattggagaagtttgcaagcaagcatgccgg 424

                                                                       
Query: 121 gagtgcaggtaacctcccctcttccctgggagctgggtgccttccggagctgcctagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gagtgcaggtaacctcccctcttccctgggagctgggtgccttccggagctgcctagctg 364

                                                                       
Query: 181 gtgctgggtttgtgatagattcagggtcatacttgcagtcctttacttactgcttattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgctgggtttgtgatagattcagggtcatacttgcagtcctttacttactgcttattcc 304

                                                                       
Query: 241 attggtaactcttctgggaaaacatacttgcagctggttgatcgccatgaacaggcatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 attggtaactcttctgggaaaacatacttgcagctggttgatcgccatgaacaggcatat 244

                                                      
Query: 301 ggcagcctgtggtatatatcttccagcgatataggacacagtt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggcagcctgtggtatatatcttccagcgatataggacacagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no318_d20.g1 MSMg01no318_d20.g1 CHROMAT_FILE:
MSMg01no318_d20.g1 PHD_FILE: MSMg01no318_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:23 2005
         (349 letters)



>mm_chr16_10941411_10942159
          Length = 749

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggaccacccccttccagccagggccttgccagtcaccctggtcccctgtcactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggaccacccccttccagccagggccttgccagtcaccctggtcccctgtcactgag 260

                                                                       
Query: 61  ctgctccctgcacggtgtcctatgtcaccagcatcccaggtccagctgtgcatgcccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctccctgcacggtgtcctatgtcaccagcatcccaggtccagctgtgcatgcccagt 320

                                                                       
Query: 121 aacatcgtctccatttcattctcactcaagccaacctggcctatcctagtccacaccgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aacatcgtctccatttcattctcactcaagccaacctggcctatcctagtccacgccgct 380

                                                                       
Query: 181 ggacacggcagagacagcttcacagagtgactacatggcgagtggtagtgggcaaattga 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggacacggcagagacagcttcacagagtgactacatggtgagtggtagtgggcaaattga 440

                                                                       
Query: 241 tgaatgcatgattatttgagtctatacagacagaggccacaggaaggcaaagaggatcta 300
           ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatgcatgaataaatgagtctatacagacagaggccacaggaaggcaaagaggatcta 500

                                                        
Query: 301 tggtggcagaagtcaaaagaataatgcccttagcagaggtggcca 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtggcagaagtcaaaagaataatgcccttagcagaggtggcca 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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