BAC Information

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BAC

Clone NameMSMg01-319C08
Chromosome16 (Build37)
Map Location 27,399,542 - 27,399,889
singlet/doubletsinglet
Overlap geneCcdc50
Upstream geneCldn16, LOC100043057, Il1rap, Gm606, Ostn, Uts2d
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C08.T7 (MSMg01no319_c08.b1)MSMg01-319C08.TJ (MSMg01no319_c08.g1)
ACCAG438750AG438751
length720727
length of high quality
(start - end)
348 (72 - 419)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no319_c08.b1 PHD_FILE: MSMg01no319_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005CHROMAT_FILE: MSMg01no319_c08.g1 PHD_FILE: MSMg01no319_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTTTTACCTACCACAACTCCACCCATCTGTTTCATTTTCTGAGCA
GCACTGTCCCTGGCACTTTAATGCCCTCATAGGATTTGGCAGCAAGTTCT
CTGTTTGCCTAGAAAGAAAAGCCACTATCTCCTTAAACCTCTGTAGAATA
AACCTAGTGCTGCTCATTAAAACCCAAATGATCACATCCAACCCAACTTA
CCAGGGGGAAAACCTATCTAATGCTAAGTCCTAGTTCCTGAAAGATTGGT
TTATCTAAGTCTGACTGTACACTTTCACTTCTCTTCTGGGAGTACATACT
TGGTTGCCGTGTAGTCCCCTATTATCATTAGTAAATTTATTTCATTAAAA
ATAAGGAATCTATACTAAACACTCCCAACTTTATTGCAGCTCATAAGAAA
AGTAGACAAGAGAAATATCTCTAAAAGATTTTCCCCAAAATTGTAAAATT
CAGATTTTCATTCTGATAACTCTGTCAAAATCTTTACAAGTTTCCAGTAA
CCTCAAAATATGTAAAATAAAATTAGGTAAGAAACAAGTCAGCAAGTCTT
GAGATTGCCACAAATTTAGTCTGAAACATCACCATATCTCTATGCAGATG
ACCCTGAGATCACAGGCACCTTCCTAGACTACATTCAGTCTTGTGATTTA
GGGTCCGCACAGATCAGACN
CGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTTAGTTCTATACTTCATTTGTT
AATTGGTTCATTTGGGGTTTTGCCCGTTAGCTTCTTGAGTTCTTTATGTA
TTAGCTCTCTATTGGATATGGGGTTAGTGAAGATTTTTCCCAATCTATAG
GTTGCAAATTTGTCTTATCAACTATGTCCTTTGCCTTACAGAAGCTTTCT
AGTTTCATGAGGTCCCATGATCCAATTCTTGATTTTATCGTGTGATCCAT
TGGAGTTCTCTTTAGGAAATTTCTTCTGTGCCAATGAGTTCAAGACTCTT
TCCCACTTTTTCGTCTTTTATAGTACCTGCATCTGCTTTTATGTTGAGGT
CCTTGATCCACTTGGATTACCCCCCCCCACAAGGTAACAAATATGCGTCT
ATTTTCATTTTTCTACCTACCGACAGACAGTTAAACCAGTACTGTTCATT
GAATATGCTTTCCCTTTTCCATCGTACTTATTTTGACGTCTTTGCCCTAC
ATTTCTTGCGCGTACGTGCGTGGTTTTTACCCCCAGCCCTCCGGTTTTGT
CGCATTTGTTCTCTTTCCCACCCCCTTGTTTTCTCATTTTCTCCTTTTTT
ACCCCTCGCTTCTCTGTTTCTCTTTTTTTTATTTTTATTAATTCTTACCC
TCTCTTATTGCACTCCTTTCTATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c08.b1 MSMg01no319_c08.b1 CHROMAT_FILE:
MSMg01no319_c08.b1 PHD_FILE: MSMg01no319_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:26 2005
         (348 letters)



>mm_chr16_27399342_27400089
          Length = 748

 Score =  658 bits (340), Expect = 0.0
 Identities = 346/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccacccatctgtttcattttctgagcagcactgtccctggcactttaatgccctcata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 548 ctccacccatctgtttcattttctgagcagcactgtccctggcactttaatggcctcata 489

                                                                       
Query: 61  ggatttggcagcaagttctctgtttgcctagaaagaaaagccactatctccttaaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggatttggcagcaagttctctgtttgcctagaaagaaaagccactatctccttaaacctc 429

                                                                       
Query: 121 tgtagaataaacctagtgctgctcattaaaacccaaatgatcacatccaacccaacttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtagaataaacctagtgctgctcattaaaacccaaatgatcacatccaacccaacttac 369

                                                                       
Query: 181 cagggggaaaacctatctaatgctaagtcctagttcctgaaagattggtttatctaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagggggaaaacctatctaatgctaagtcctagttcctgaaagattggtttatctaagtc 309

                                                                       
Query: 241 tgactgtacactttcacttctcttctgggagtacatacttggttgccgtgtagtccccta 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgactgtacgctttcacttctcttctgggagtacatacttggttgccgtgtagtccccta 249

                                                           
Query: 301 ttatcattagtaaatttatttcattaaaaataaggaatctatactaaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttatcattagtaaatttatttcattaaaaataaggaatctatactaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)