BAC Information

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BAC

Clone NameMSMg01-319K24
Chromosome16 (Build37)
Map Location 53,300,266 - 53,300,612
singlet/doubletsinglet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319K24.T7 (MSMg01no319_k24.b1)MSMg01-319K24.TJ (MSMg01no319_k24.g1)
ACCAG439135
length743741
length of high quality
(start - end)
---346 (72 - 417)
definitionCHROMAT_FILE: MSMg01no319_k24.b1 PHD_FILE: MSMg01no319_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:04 2005CHROMAT_FILE: MSMg01no319_k24.g1 PHD_FILE: MSMg01no319_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCCAAATAATTAGAAGTTTGCGTGCTCTTCACATTAAGATTCC
ACTATTTCCAAACTAGACCGCTTTTATTATTTGTTTACTTTCATTCATTT
GGTCATTTAATTTAATTTAATTTAATTTAATTTAATTTTTGACCTGTTAA
TTCTTCAATCATATATATGCTAATATATTAATTCACATATATATATGAAT
TAATGTCTGCTTGATCATAATTTCAGTTTGGGGAAATGCTTAGCAAATCA
AATGATAACAGAGTTGCATAGTTGCCTTTGTGATTTTTAGTTACTAGTGC
TTAAGGGAGATGATGTATCCAGAAATTACACAAAGGGAGCTGGAAGAAGA
GGATACTCTGGTTCCCCCCACTTCCCACTCATGCTAAGCTACATGGAGGG
AGAAATCAAGTAGAGGTGCTGGACTGGGAACAAGTGTCAGTGAAAACAAC
TAAAAATTATGAAAAGTAGCAGCAAAAATGTATCTGTCTTCAGGAAAATA
CTGCCATGGCTTGTTGAAGAACTGGAATTGAGGTGAGGGACAGAAGAAAT
ATCTAGTGAGGCTGCTGTGTCTGACATTCAGACATGCTATTTGCCATCAA
TCACTGCACTTATATCTCCAGCCTAGAATGAAGAAGACCCATAAGACAGA
TTTAATAATTCCTGGATCTGGCGATTTAAAGATATAGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_k24.g1 MSMg01no319_k24.g1 CHROMAT_FILE:
MSMg01no319_k24.g1 PHD_FILE: MSMg01no319_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:04 2005
         (346 letters)



>mm_chr16_53300070_53300815
          Length = 746

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/347 (97%), Gaps = 4/347 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttgcgtgctcttcacattaagattccactatttccaaactagaccgcttttattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 197 agtttgcgtgctcttcacattaagattccactatttccaaactagattgcttttattatt 256

                                                                       
Query: 61  tgtttactttcattcatttggtcatttaatttaatttaatttaatttaatttaattt--- 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 257 tgtttactttcattcatttggtcatttaatttaatttaatttaatttaatttaatttaaa 316

                                                                       
Query: 118 -ttgacctgttaattcttcaatcatatatatgctaatatattaattcacatatatatatg 176
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttgacctgttaattcttcaatcatatatatgctaatatattaattcacatatatatatg 376

                                                                       
Query: 177 aattaatgtctgcttgatcataatttcagtttggggaaatgcttagcaaatcaaatgata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aattaatgtctgcttgatcataatttcagtttggggaaatgcttagcaaatcaaatgata 436

                                                                       
Query: 237 acagagttgcatagttgcctttgtgatttttagttactagtgcttaagggagatgatgta 296
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acagagttgcagagttgcctttgtgatttttagttactagtgcttaagggagatgatgta 496

                                                          
Query: 297 tccagaaattacacaaagggagctggaagaagaggatactctggttc 343
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tccagaaattacacaaagggagctggaagaagaggatactctggttc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)