BAC Information

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BAC

Clone NameMSMg01-319M24
Chromosome16 (Build37)
Map Location 53,300,313 - 53,300,768
singlet/doubletsinglet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319M24.T7 (MSMg01no319_m24.b1)MSMg01-319M24.TJ (MSMg01no319_m24.g1)
ACCAG439225AG439226
length731727
length of high quality
(start - end)
516 (130 - 645)452 (117 - 568)
definitionCHROMAT_FILE: MSMg01no319_m24.b1 PHD_FILE: MSMg01no319_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:12 2005CHROMAT_FILE: MSMg01no319_m24.g1 PHD_FILE: MSMg01no319_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACTCGCGCGGATTCTTT
GTTCATTACGNGCACTAGGTTTTAATGGGGTTATTTTATTTTCTTGAGTC
CACCTTCTTGATTTCTCCCTATATATAGTGGATTTAGTCCCCTATCTGAT
TTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTT
ATTGATGGTGTTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCA
TTTATCGATTCTTGATCTTACAGTACAAGCCATTGCTGTTCTATTCAGGA
ATTTTTCCCCTGTACCCATTGCTGTGGAAACGGAACAACATTCTTCCCAA
TGATACCGTGGTCAAGGAAGGAATAAAGAAATTAAGGACGTTTTAGAGTT
TAATGAAAATGAAGCCACAACATACCCAAACTTATAGGACACAATGAAAG
CATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAAAGGAACTAG
AGAGAGCACACATTAGCAGCTTGACAACACAGCTAAAAGCTCTAGAACAC
AAGGAAGCAAATTCACCCAAGAGGTGTAGACAGCAGGAAATAATCAAACT
CAGGGGCAAAATCAAACCAGTGTAAACAGGAGGAACTATTCACAGAATTA
ACCAAAGAGGAGCTGGTTCTTTGACAAATCAACAAGATAGATAAACCCTT
AGCCTGGCTCACTAGAGGGCACAGGGAAAAC
GTGGGAGGCCTGGNGGAAGCCTGGCCTACTAAACAGGTGAACTATAGAAG
GATTCCCGCAATACATTAAAAGTTTGCGAGCTCTTCACATTAAGATTCCA
CTATTTCCTTTTAGATTGCTTTTATTATTTGTTTACTTTCATTCATTTGG
TCATTTAATTTAATTTAATTTAATTTAATTTAATTTTTGACCTGTTAATT
CTTCAATCATATATATGCTAATATATTAATTCACATATATATATGAATTA
ATGTCTGCTTGATCATAATTTCAGTTTGGGGAAATGCTTAGCAAATCAAA
TGATAACAGAGTTGTAGAGTTGCCTTTGTGATTTTTAGTTACTAGTGCTT
AAGGGAGATGATGTATCCAGAAATTACACAAAGGGAGCTGGAAGAAGAGG
ATACTCTGGTTCTGGTCACTTTCCACTCATGCTAAGCTACATGGAGGGAG
AAATCAAGTAGAGGTGCTGGACTGGGAACAAGTGTCAGTGAAAACAACTA
AAAATTATGAAAAGTAGCAGCAAAAATGTATCTGTCTTCAGGAAAATACT
GCCATGGCTTGTTGAAGAACTGGAATTGAGGTGAGGGACAGAAGAAATAT
CTAGTGAGGCTGCTGTGCCTGACATTCACACATGCTATTTGTCATCAATC
ACTGCACTTACACCTCAAGTCTAGAATGAAGAAGACCCATAAGACAGATT
TAATAAGTCCTGGATCTGGCGGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_m24.g1 MSMg01no319_m24.g1 CHROMAT_FILE:
MSMg01no319_m24.g1 PHD_FILE: MSMg01no319_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:12 2005
         (452 letters)



>mm_chr16_53300117_53300968
          Length = 852

 Score =  847 bits (438), Expect = 0.0
 Identities = 450/456 (98%), Gaps = 4/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttttattatttgtttactttcattcatttggtcatttaatttaatttaatttaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgcttttattatttgtttactttcattcatttggtcatttaatttaatttaatttaattt 256

                                                                       
Query: 61  aatttaattt----ttgacctgttaattcttcaatcatatatatgctaatatattaattc 116
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatttaatttaaatttgacctgttaattcttcaatcatatatatgctaatatattaattc 316

                                                                       
Query: 117 acatatatatatgaattaatgtctgcttgatcataatttcagtttggggaaatgcttagc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acatatatatatgaattaatgtctgcttgatcataatttcagtttggggaaatgcttagc 376

                                                                       
Query: 177 aaatcaaatgataacagagttgtagagttgcctttgtgatttttagttactagtgcttaa 236
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaatcaaatgataacagagttgcagagttgcctttgtgatttttagttactagtgcttaa 436

                                                                       
Query: 237 gggagatgatgtatccagaaattacacaaagggagctggaagaagaggatactctggttc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gggagatgatgtatccagaaattacacaaagggagctggaagaagaggatactctggttc 496

                                                                       
Query: 297 tggtcactttccactcatgctaagctacatggagggagaaatcaagtagaggtgctggac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggtcactttccactcatgctaagctacatggagggagaaatcaagtagaggtgctggac 556

                                                                       
Query: 357 tgggaacaagtgtcagtgaaaacaactaaaaattatgaaaagtagcagcaaaaatgtatc 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgggaacaagtatcagtgaaaacaactaaaaattatgaaaagtagcagcaaaaatgtatc 616

                                               
Query: 417 tgtcttcaggaaaatactgccatggcttgttgaaga 452
           ||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtcttcaggaaaatactgccatggcttgttgaaga 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)