Query= MSMg01no319_n13.b1 MSMg01no319_n13.b1 CHROMAT_FILE:
MSMg01no319_n13.b1 PHD_FILE: MSMg01no319_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:14 2005
(246 letters)
>mm_chr16_19362300_19362945
Length = 646
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%)
Strand = Plus / Plus
Query: 1 atgttctttacatcagactcagcatttgtcttcttgatttggaggtattgcgaggaggta 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 atgttctttacatcagactcagcatttgtcttcttgatttggaggtatcgagaggaggta 260
Query: 61 aggaatgacattgctaatatagattgggctaagttgcaaggtatagaggggaattatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaatgacattgctaatatagattgggctaagttgcaaggtatagaggggaattatgtc 320
Query: 121 agaagtcctctatcacctagttcctgaccacagggctagaaaattgaattgatggctgtt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagtcctctatcccctagttcctgaccacagggctagaaaattgaattgatggctgtt 380
Query: 181 tctgaacctggaagataggtgttgaacatctagtgctgtcatttctcctttgctgtaaat 240
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tctgaacctggaagataggtattgaacatatagtgctgtcatttctcctttgctgtaaat 440
Query: 241 cttgc 245
|||||
Sbjct: 441 cttgc 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no319_n13.g1 MSMg01no319_n13.g1 CHROMAT_FILE:
MSMg01no319_n13.g1 PHD_FILE: MSMg01no319_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:15 2005
(609 letters)
>mm_chr16_19389934_19390942
Length = 1009
Score = 1064 bits (550), Expect = 0.0
Identities = 595/610 (97%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 1 tttgtttatctctgtgcccca-tttttaatgggattatttgatttttctggagtccatct 59
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tttgtttagctctgtgccccattttttaatgggattatttgatttttctggagtccatct 701
Query: 60 tcttgagttctttatatatattggatattagtcccatgtcagatttaggattggtaaaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tcttgagttctttatatatattggatattagtcccatgtcagatttaggattggtaaaga 641
Query: 120 tcctttcccaatctgttggtggccgttttgttttactgacagtgtcttttgccttacaga 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 640 tcctttcccaatctgttggtggccgttttgttttattgacagtgtcttttgccttacaga 581
Query: 180 agctttgcaattttatgaggtcccatttgttgattcttgaattaggttatcaagctaggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agctttgcaattttatgaggtcccatttgttgattcttgaattaggttatcaagctaggt 521
Query: 240 caaatagagtgagttatatggtttcctgtggggataggaatgaataggatgtgaaacagg 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caaatagagtgagttatgtggtttcctgtggggataggaatgaataggatgtgaaacagg 461
Query: 300 tcatctggtgaatgaatatttgggattttctagttttactgtaccgcgctgttctgatcc 359
||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 460 tcatctggtgaatgaatatttgggattttctagttttactgcagtgggttgttctgatcc 401
Query: 360 tgcttgtagtctaattctaaatactagttccccaagatgtggttgtccccagttaccaaa 419
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 400 tgcttgtagtctaatgctaaatactagttccccaaaatgtggttgtccccagttaccaaa 341
Query: 420 ccctcatatattcaagtgatgagttgtgaacctttgctccaattcaagtggccaataaaa 479
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcctcatgtattcaagtgatgagttgtgaacctttgctccaattcaagtggccaataaaa 281
Query: 480 ggctagagcatgtgatttgacagtggaagaagaaagaccagtcaggggtttgatagaggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggctagagcatgtgatttgacagtggaagaagaaagaccagtcaggggtttgatagaggg 221
Query: 540 gttgcaggttgaaagaggaggggcagaagaagacagagaaagaggaagctaccatggacc 599
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 220 gttgcaggttgaaagagga-gggcagaggaagacagagaaagaggaagctaccatggacc 162
Query: 600 agaaccatgt 609
||||||||||
Sbjct: 161 agaaccatgt 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
