BAC Information

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BAC

Clone NameMSMg01-320F20
Chromosome16 (Build37)
Map Location 38,289,661 - 38,289,893
singlet/doubletsinglet
Overlap geneNr1i2
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
Downstream gene4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320F20.T7 (MSMg01no320_f20.b1)MSMg01-320F20.TJ (MSMg01no320_f20.g1)
ACCAG439618AG439619
length774670
length of high quality
(start - end)
54 (72 - 125)234 (62 - 295)
definitionCHROMAT_FILE: MSMg01no320_f20.b1 PHD_FILE: MSMg01no320_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:51 2005CHROMAT_FILE: MSMg01no320_f20.g1 PHD_FILE: MSMg01no320_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTTCTCCCTGATTTATATGGAAGGCTCGTCTTTCAAAAAGA
AAAGATAATACAGGATTTTTCCCCTTAGAACTGGTGNGAGNTCNCNAANA
ATTGGAGGNAGGNGNGNGNGNGNGNGAGNGNGNGNGNGAGNGNGNGAGAG
NGNGAGAGAGAANGAGNANGNGAGAAAAGAAGGGAGGAGAAGAGAGGGTT
TTTTTAATATTATTTGTGAATTTTTTTTATATGTATGATATTTGAGGTTT
TAGAANGAAGGGATTTTTTTTTTTTTGAAAGAAAGAGAAAAAAAAGGAGG
GGGTTTTTAAATAAATTTCCCCAAACAAAAACCCCCGGAGGGGGGAGGGA
GGGGGGGGGGGGGGGGGGGGGNAAAAAGGNNAAGNNNNAAAAGNGGGGGG
GGGNNNGGGGGGGNNNNNNANNNNNNNNNNNNNNNANAGGAGGGGGGNGG
AGAAAAGGAAGGAGAAAGGGGAAAGAGGAGAGGAAGAAAAAAAGGGGAAG
AAAGAGGGAAGGAAAAGAAAAGAAGAGAGAGGAGAGAAAAAAAGGGGAAG
AAAAAAAGAAAGGAGAGGGAGAAAGAGGGAGGGAGAGGAAAGAGGGGAAA
AGAGGGGAAAAGGGAGAGCGGAAGGAGAGAATATGGTTTTTTTTTAAGTT
GTTGTGGTAATTATTTATGTTTTTAGTTGGTGTTTTTGATATTATTTTGT
TATTTTTTTATGTTATTATTAGTG
ATCCGCGGAATTCAGTGCCCTCTTCTGCCTCCGCGGACATCAGACACACA
CTTTTTGCCCAGACAACAGGCAGGCAAGACAACCACGCCAATAAAAAGAA
ATCTCAAAAACCAAGCAAAGAAGTATGGTATACGGACCATTCGATAGAGC
ACATCAACCCAAGACTGTTCTCTGTCACAGATATTGTTCATTTTATGCAT
GATGGCCATGAAAAAAAACAGTAAGAAAAAAATTAAGCTATATAAGAAAA
GGAAGATTTAAAAATCTACTGTACATAAAAAAATATGACTTTCTTTCGAT
AAAGTCCCAAGGACTNTATCCGCAACCCTTAAGAGAATTTGATACAGTGC
CCTGATAAAACAAATAAAAACCAAACAGATCTCCGGGAGAAAAGTTTGAA
AATATGAGATCCATAGTAGGATAGGCTCAGGGGCAGGGTCTAAGAAGACA
ATTATTTTACTGTGGTAACAAGCGTAATGTTTCAAATGAGTCAGGGAACG
ATCAACCCTTTCTAGACTAATTCGTTGAAATAATCGCATGTGAACTATAA
ACCTAATTTTAAGTCATAAAAAGTTTGCTAAAATACCTTCTTAATTCTAA
AGGCTGAAAAAAAAGCCTCCTTAAATAATCTTATCAGAGTATGATCTATA
GCCCAAAACTAGCCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_f20.g1 MSMg01no320_f20.g1 CHROMAT_FILE:
MSMg01no320_f20.g1 PHD_FILE: MSMg01no320_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:51 2005
         (234 letters)



>mm_chr16_38289461_38290094
          Length = 634

 Score =  414 bits (214), Expect = e-120
 Identities = 229/234 (97%), Gaps = 2/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacaacaggcaggcaagacaaccacgccaataaaaagaaatctcaaaaaccaagcaaaga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaacaggcaggcaagacaaccacaccaataaaaagaaatctcaaaaaccaagcaaaga 260

                                                                       
Query: 61  agtatggtatacggaccattcgatagagcacatcaacccaagactgttctctgtcacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatggtatacggaccattcgatagagcacatcaacccaagactgttctctgtcacaga 320

                                                                       
Query: 121 tattgttcattttatgcatgatggccatgaaaaaaaa-cagtaagaaaaaaattaagcta 179
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tattgttcattttatgcatgatggccatgaaaaaaaaacagtaagaaaaaaattaagcta 380

                                                                 
Query: 180 tataagaaaaggaagatttaaaaatctactgtacataaaaaaatatgactttct 233
           ||||||||||||||||  |||||||||||||||||||||||| |||||||||||
Sbjct: 381 tataagaaaaggaagaggtaaaaatctactgtacataaaaaa-tatgactttct 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)