BAC Information

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BAC

Clone NameMSMg01-320K08
Chromosome16 (Build37)
Map Location 51,161,698 - 51,162,009
singlet/doubletsinglet
Overlap genenone
Upstream geneBbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320K08.T7 (MSMg01no320_k08.b1)MSMg01-320K08.TJ (MSMg01no320_k08.g1)
ACCAG439825AG439826
length806837
length of high quality
(start - end)
326 (180 - 505)160 (182 - 341)
definitionCHROMAT_FILE: MSMg01no320_k08.b1 PHD_FILE: MSMg01no320_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:12 2005CHROMAT_FILE: MSMg01no320_k08.g1 PHD_FILE: MSMg01no320_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGGTTTTTTNTNNNTTTTNGTTCTTTCCTTTTCTTTCTACTACANNNT
NTTACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATATGCCCTGAGTTCAATTCCCAACAACCACATAATG
GTATATAACAATCTGTAATTTTTATCCCCCCCTCTTCTGGTACACAGGTG
TATATATGGATAGAATACCCTTGCATAAAATAAATAAATACATTTTTAAA
AGATATAGAAAAATGAAAAATCTACCAAGAATGATTATGAATCATAAATT
TAGCAAATCCCAATAAAGTGTAAAAAGCCAGCTTTACACAAACTATTCAC
CAATAAAAATATAATTATAATTTGATAATAAGAAAATAAAATGAATGTTG
CTATTCTCAAAATGATATAAACAGCTCACAGGACAAGGGAACAAGTCATA
GTGAAAAATAAAAATATTAAACATTATATACACAAAATGTCACATCACAT
CTAATAGAAATAAGCTAACTCTTAATATAGAAAAATTAAGGGGAAAAATG
AATAAATAAAAATGACTTTGGCTAAATCCAGTTAATGTGGGAAAAAGAAG
CTGAGAATAAAAATAATAGCCATTTTAATTTTATAAAACCCGCAATATAT
TAATTTTTTTCTTGCATGATATATAATTTTTGCCATTCTTCTATTACCAT
TTTTTTTCCTATGCGCTAATTAGGCGTAAAATAGTTTGAAGTTGTAACCT
TCCATGGATTTTAGATAAATGTATATGTCCATCAAGTATCTTCTCTATCA
ATATTG
CCCCCCCCCNCCGNNCCTATCCTTTTTTTTATTTTTTCGTTTATAAACTT
TCTTCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGTACTGGCAGTTGCTT
ATATATGCATATGTAAGTATTTGCCTCTTTGAGTGCATCTGTGTGTGTCT
AAGTTGATGTGACAAGATTGTTCATTGAAAAGGTGAATGTGTGTATGAAT
GTATATGTGTTTCTGTGCACATTTGCTTTTGTAAGAGTTTTTCTTTCTGT
GGGTATGACTCTTTTCCTAATTGAATAGAAGTTAATTGCTCTAAGCATTG
ACTGTCCAGTGAGAGGTGAGGTTCTGGTCATTAGAGAAAGGAGCCTTTAA
AGCTAATCTTTTTCCATAATTTTTCCCCCCCCCCCCCATTGAGAGTTAAT
TGCCAGAGGTCTGTTGTTCCTGGTCTCAAAAAAAAAAAAAATACTAGATG
TTTTTTTGTAATAAGCAAACTTTATTCTTGCAATATCTAGTTTTGTCCCT
GCCAATAACTCACCCAATTTGGCTGCTTTCCATAAAGAATCCAGCCAGTG
GCATAACTCTTGGCCAATTCTGTTCTGTGCTCTTTTCATCACTTTAGTTA
ATACGTATATAAAATCTTTCATTAATGTCTAGGTTTTTCTGGTTTTTATC
GCCGCCCTCCATAACATTCTGGGTTATATTTTTTCCTTGCCCGTCATTTA
TCCTTTGATCTTATCTCACAATATAATATTTATATAATACTACTTTTTTT
TCTATTTTCTCTTTTAATCCATTTATTTCTTGAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_k08.b1 MSMg01no320_k08.b1 CHROMAT_FILE:
MSMg01no320_k08.b1 PHD_FILE: MSMg01no320_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:12 2005
         (326 letters)



>mm_chr16_51161284_51162009
          Length = 726

 Score =  491 bits (254), Expect = e-143
 Identities = 293/312 (93%), Gaps = 10/312 (3%)
 Strand = Plus / Minus

                                                                       
Query: 25  atatggatagaatacccttgcataaaataaataaatacatttttaaaagatatag----- 79
           ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||     
Sbjct: 726 atatggatagaatactcttacataaaatagataaatacatttttaaaagatatagaaaaa 667

                                                                       
Query: 80  -----aaaaatgaaaaatctaccaagaatgattatgaatcataaatttagcaaatcccaa 134
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagaaaaaaatgaaaaatctaccaagaatgattatgaatcataaatttagcaaatcccaa 607

                                                                       
Query: 135 taaagtgtaaaaagccagctttacacaaactattcaccaataaaaatataattataattt 194
           |||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 606 taaagtgtcagaagccagctttatacagactattcaccaataaaaatataattataattt 547

                                                                       
Query: 195 gataataagaaaataaaatgaatgttgctattctcaaaatgatataaacagctcacagga 254
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gataataagaaaataaaataaatgttgctattctcaaaatgatataaacagctcacagga 487

                                                                       
Query: 255 caagggaacaagtcatagtgaaaaataaaaatattaaacattatatacacaaaatgtcac 314
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 486 caagggaacaagtcatagtgaaaattaaaaatattaaacattatatacacaaaatgtcac 427

                       
Query: 315 atcacatctaat 326
           ||||||||||||
Sbjct: 426 atcacatctaat 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)