BAC Information

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BAC

Clone NameMSMg01-320P24
Chromosome16 (Build37)
Map Location 66,410,865 - 66,411,177
singlet/doubletsinglet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320P24.T7 (MSMg01no320_p24.b1)MSMg01-320P24.TJ (MSMg01no320_p24.g1)
ACCAG440088AG440089
length745755
length of high quality
(start - end)
319 (43 - 361)234 (131 - 364)
definitionCHROMAT_FILE: MSMg01no320_p24.b1 PHD_FILE: MSMg01no320_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:38 2005CHROMAT_FILE: MSMg01no320_p24.g1 PHD_FILE: MSMg01no320_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCAAAGGCGCTTTATTACCAAATCTCCTCTCAAATTTTATCACCAG
AGAATTTTTTTTCTTTCTCCCCGATGATTCCTAACAAGGATATAATTTCA
AAATATGTAACAGTGCTATAGTGTACTTAAAATTAATTATTAAAATTTAT
TTAAATTTATTACTAAAAAAGCCTACTATAGATCATGAGCTAGAATCTTT
TTCTAGTCAGTTCGGTTTAACTAGATACATCATAAATTATACTTATAAAA
GACTGTATTGCAAAAAGAAATTGCAATGTAGAAAGTTTTCATTATCCTGC
TTTAGCACCTTTTGGTAATTCCCCACCTGAGTGGCCAATAAAAGTGACTT
TCTGGAAACATTAATTTTAATGACATTATCTGTGTATTTGAATCATCTTA
CTCTCTGCTGTTAGTACAGAAAGCTCCATAATCCCATACTTTACATTTTT
CCCCATGATAATTGTACATACTGTCCTACCTCTTAGTCCCATTCTTTATA
TTACTTCATAGTTTTGAACCAGGAGATGTCTTCAGAGTGGCTGAATTTGG
CATAAAGGGAGCAATGTCAAGGGAAAGTACCTGTCTCTTTCTAACCAAGG
GATTGAGTTTCTATTATGGCTTCCATATTAAATTTGCCCATTAATTAACT
CCTCATAAGGTGCTTTTATAATGGCTGTTGAAAGTTCCAGGTGCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTTACATTGTTATACTTTCA
CAAGTTGACACAAAACTTTTCACCCCAATTGACCCCTTGTCAACTTGACA
CACAAACACATCACTAGTAAGCTTCAACTCTTAACATTCTTATTCATCCC
CAAGGTCTAAATAACTTTAAATGTCCCACAGTCTTTACATATTCTTAAAA
TGTCAATCTCTTTAAAATATCCATGTCTTTTAAAATCCAAAGACTTTTTA
CAATTAAAAGTCTCTTAACTGTGGCCTCCACTAAAATAGTTTCTTCCTTC
AAGAGGGAAAATATCTTGTTTCACCCACCCTCCCAAGCAAATATCAATCT
CCAACGATCCAGTGTCTGGGACCTAACTCAAGAACATCTGGGCTCCTCCA
AGGGCTTGGGTCACTTCTCCAGCCATGCCCTTTTTAGCACACGCTCGATC
TCTAGGCTCCAGATGCCTGTACTCCACTGCTGCTGCTCTTGGTGGTCATC
TCATGGTACTGGCATCTCCAAAACACTGCATGACCCCTTCAGTCCTGGGC
CTTCAATTGCAACTGAGGCTGCACCTTCACCAATGGCCTTCCATGGCCTC
TCACAGTGCTGACCCTCAGCTGCTCTGTGTGAACCCTTCATGCCTACATG
CCTTAAAACCAGTTACACCTGGGTAACCCTTACACATTACCAAGTCCCAC
TGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_p24.b1 MSMg01no320_p24.b1 CHROMAT_FILE:
MSMg01no320_p24.b1 PHD_FILE: MSMg01no320_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:38 2005
         (319 letters)



>mm_chr16_66410661_66411379
          Length = 719

 Score =  543 bits (281), Expect = e-159
 Identities = 305/317 (96%), Gaps = 8/317 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcaaaggcgctttattaccaaatctcctctcaaattttatcaccagagaatt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcaaaggagctttattaccaaatctcctctcaaattttatcaccagagaatt 264

                                                                       
Query: 65  ttttttc----tttctccccgatgattcctaacaaggatataatttcaaaatatgtaaca 120
           |||||||    ||| |    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttttcaaactttgt----gatgattcctaacaaggatataatttcaaaatatgtaaca 320

                                                                       
Query: 121 gtgctatagtgtacttaaaattaattattaaaatttatttaaatttattactaaaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctatagtgtacttaaaattaattattaaaatttatttaaatttattactaaaaaagc 380

                                                                       
Query: 181 ctactatagatcatgagctagaatctttttctagtcagttcggtttaactagatacatca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctactatagatcatgagctagaatctttttctagtcagttcggtttaactggatacatca 440

                                                                       
Query: 241 taaattatacttataaaagactgtattgcaaaaagaaattgcaatgtagaaagttttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattatacttataaaagactgtattgcaaaaagaaattgcaatgtagaaagttttcat 500

                            
Query: 301 tatcctgctttagcacc 317
           |||||||||| ||||||
Sbjct: 501 tatcctgcttcagcacc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)