BAC Information

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BAC

Clone NameMSMg01-321G15
Chromosome16 (Build37)
Map Location 62,543,560 - 62,543,870
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321G15.T7 (MSMg01no321_g15.b1)MSMg01-321G15.TJ (MSMg01no321_g15.g1)
ACCAG440390AG440391
length767738
length of high quality
(start - end)
314 (42 - 355)665 (74 - 738)
definitionCHROMAT_FILE: MSMg01no321_g15.b1 PHD_FILE: MSMg01no321_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:09 2005CHROMAT_FILE: MSMg01no321_g15.g1 PHD_FILE: MSMg01no321_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTCAGGTCACTGAGAAAACAAATACAATTTCCCATGCCATTTAATGTG
GTCCAACATATACTACAGACGCTCAGTGAATGCTTGTGGCTGGACAAGAC
AGTAAATCATTCTTTCATCAATACAATTGTTTGCTTATGGAGGCTCCTCT
TGTTGGTTGTGCGGGAGACTGATGACCAAGATAATTTGTGTCTGGACAGA
AGTGACTTCATATTACAAGTGTCACTAGGAATTGTTAGTATTATGCACAT
TACAAAGCAGCCAACAGTTATGAATGCTGCAACGTGCTTCCTGCTCCTTA
TCCTCTTTTGTTTGTTTGCCCCCCTCCACTTTTTCTTTCCTTTCTCCCTT
CCTCCCTCGGGCCCCCCCCCAAAAAAAAAAAAAAANCGGGGTGGGGGGGG
GGGGACCCCTTTATCATTCACATTTCTTCACTTCTTTTTCCATTTATTCC
ACACCCCTTACTTCCTCTTTTACCTTTCTCTTTCAATCTCCCTTTTTTAT
TTTTTCCCTTCTTTTCTTATTCCTTTCTTCCCATCTTTTTTTTCCCCTCT
ATATCCATATCCATTCACTATTACACTTTTCCCCCCCTCTTTTCCTCCCT
TTTTTTTTTTCCCCTTTTTTTATCTTTATAATTATCCCTTCTACCCCCTC
CCATTCCTATTTTTTTCCCTATACCTCCCTATTCTCTCTTTTTTATTTCC
CCTACCTTCCCTTTTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAACACCTGAAAAAATGTTCAGCATTCTTAATCTTCAGGGAAATGCAAAT
CAAAAAAACCCTGAGATTCCATCTCACAGCAGTCAGAATGGCTTAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGAGATTGCAAGCTTGTACAACCATTCTGGAAAGC
ATCTGGCGGTTCCTCAGAAACTTGGACATAGTACTACCAGAGGATCCCGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACCACGCTTATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCGAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATAGAGTACTACTCAGCTATTAAAAAAAATGAATTTA
TGAAATTCCTAGCCAAATGAATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGTTTTCTGAACTCTTGCTGGCTGGTTCAACTCACCAGTCCTGGC
TCAAACTCCTGTCTGAGCTGACTTACTCAAACTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_g15.b1 MSMg01no321_g15.b1 CHROMAT_FILE:
MSMg01no321_g15.b1 PHD_FILE: MSMg01no321_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:09 2005
         (314 letters)



>mm_chr16_62543357_62544070
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtcaggtcactgagaaaacaaatacaatttcccatgccatttaatgtggtcc 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattctgtcagggcaatgagaaaacaaatacaatttcccatgccatttaatgtggtcc 455

                                                                       
Query: 64  aacatatactacagacgctcagtgaatgcttgtggctggacaagacagtaaatcattctt 123
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacatataccacagaagctcagtgaatgcttgtggctggacaagacagtaaatcattctt 395

                                                                       
Query: 124 tcatcaatacaattgtttgcttatggaggctcctcttgttggttgtgcgggagactgatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcatcaatacaattgtttgcttatggaggctcctcttgttggttgtgcgggagactgatg 335

                                                                       
Query: 184 accaagataatttgtgtctggacagaagtgacttcatattacaagtgtcactaggaattg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 accaagataatttgtgtctggacagaagtgacttcatattacaagtgtcactaggaattg 275

                                                                       
Query: 244 ttagtattatgcacattacaaagcagccaacagttatgaatgctgcaacgtgcttcctgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttagtattatgcacattacaaagcagccaacagttatgaatgctgcaacgtgcttcctgc 215

                      
Query: 304 tccttatcctc 314
           |||||||||||
Sbjct: 214 tccttatcctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)