Query= MSMg01no321_j05.b1 MSMg01no321_j05.b1 CHROMAT_FILE:
MSMg01no321_j05.b1 PHD_FILE: MSMg01no321_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:21 2005
(267 letters)
>mm_chr16_34245188_34245855
Length = 668
Score = 470 bits (243), Expect = e-137
Identities = 262/269 (97%), Gaps = 3/269 (1%)
Strand = Plus / Plus
Query: 1 gaattccatcatcctcc--aactgaagtttctgttatgccttcttgtgtcgtacccagag 58
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccatcatcc-cctaaactgaagtttctgttatgccttcttgtgtcgtacccagag 259
Query: 59 ccagtgaaggcggcagtctgcgtgtggccatctttctgaggaatggacatggaagtgccc 118
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccagtgaaggtgacactctgcgtgtggccatctttctgaggaatggacatggaagtgccc 319
Query: 119 ctggttcccacacttgcagcatgacccagcagtctgagtgcataccccagagccccaggt 178
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 ctggttcccacacttgcagcatgacccagcagtctaagtgcataccccagagccccaggt 379
Query: 179 tagtggttttcatttctctggttctatcccaggtgacaggtaggatcctctttctactga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagtggttttcatttctctggttctatcccaggtgacaggtaggatcctctttctactga 439
Query: 239 ctagacacaagttgttctaaagtcatcag 267
|||||||||||||||||||||||||||||
Sbjct: 440 ctagacacaagttgttctaaagtcatcag 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 668
Length adjustment: 9
Effective length of query: 258
Effective length of database: 659
Effective search space: 170022
Effective search space used: 170022
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_j05.g1 MSMg01no321_j05.g1 CHROMAT_FILE:
MSMg01no321_j05.g1 PHD_FILE: MSMg01no321_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:21 2005
(230 letters)
>mm_chr16_34427138_34427764
Length = 627
Score = 385 bits (199), Expect = e-111
Identities = 221/235 (94%), Gaps = 13/235 (5%)
Strand = Plus / Minus
Query: 1 acacgcatgtgtatgtatttttgcatgcgtgatgagtacatatggatgactaagtgtgtt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 427 acacgcatgtgtatgtatttttgcatgcg---tgagtacatatggatgactaagtgtgtt 371
Query: 61 atgtacttaagctcttgttggacagtaggtatctaccttgatctctgtatgtaatatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgtacttaagctcttgttggacagtaggtatctaccttgatctctgtatgtaatatatt 311
Query: 121 tgaggcagggtctccctttgagctagtctgcctacccagcttgtcctgtgctgagatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgaggcagggtctccctttgagctagtctgcctacccagcttgtcctgtgctgagatcac 251
Query: 181 aggcaggc-----cacctttttttcctgccctttttgcatggatgccaaggatgc 230
|||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 250 aggcaggccaccacacc-----tacctgccctttttgcatggatgccaaggatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 627
Length adjustment: 9
Effective length of query: 221
Effective length of database: 618
Effective search space: 136578
Effective search space used: 136578
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
