BAC Information

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BAC

Clone NameMSMg01-321K15
Chromosome16 (Build37)
Map Location 12,693,784 - 12,694,360
singlet/doubletsinglet
Overlap genenone
Upstream gene4933437K13Rik, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321K15.T7 (MSMg01no321_k15.b1)MSMg01-321K15.TJ (MSMg01no321_k15.g1)
ACCAG440574AG440575
length739737
length of high quality
(start - end)
572 (42 - 613)578 (73 - 650)
definitionCHROMAT_FILE: MSMg01no321_k15.b1 PHD_FILE: MSMg01no321_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:27 2005CHROMAT_FILE: MSMg01no321_k15.g1 PHD_FILE: MSMg01no321_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCAAGTTTCCTCTGGGATAAAATCCTGTCTGTGTCAAAATCCAATATC
ACCTTGTGGGAATGTGTGCCCTTAGAGAACATAAGTTGACCACTGAAAGA
CCTTGCTAGAATAGCACGCTGGGGATCTTCCACTAGAAGGTTGTGACAAA
CACTCCCTTCCCGGAATTTGTTTCCCTGCAAAACAAACTTTACAAGAAAG
CCTGGACACAAGGCAGGTGTAGATAATGACCAAGAATGTTTCAGTTCCCT
CTTCTGGTGACTAATACCTCACTTTACCCAGGACCATCTATGCTGCTTAG
GGAAGGTCAGGAAACACTTGCTTCTCTGGAAGGGAGAGGCTAATTACCAT
TTCTAAAGGGCCCCCAATGAAAAGGTCAGCTAGGACCAACAATGGGCTTA
AACCAACTCTTGTTACCAAGGTATACCCTTAAACTGTATAAAAGGGTTTT
CTTAGGAGATTAGGGTCACCTCTGCCCCAATTGCAGGACAACCCCAGCAC
ACTGGATCAATAAACTTCTTGCTTGTTGCATCGATCTCCATCTCTGTGTT
TCTTTGAGTGGGACATAAGGCTCTTTGGGTCTTACAAACTGATATGAACA
AAATCTATTAATCAAAAGTCAAGGCAGTTACCGAGAAAATCATGAAGGTT
ATAACTCTCTGCTTGTTCTAGTTCCCTATGGACTAAATC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTAATGTGCTTTAAATCAGGCCTGCAA
GCTCACTTGGAGACCCCACCATGCTGGAGTTCTGCAGAATAAATCCCTCT
TTGCATTTAGATAGCATTTGAATCTGGGATATCTTTGGGGAATCATGGAC
TCTTACAGTGCCTGTGTGAGTTTTTAAGTGGGAATGCAGGTGCTCTCAGA
TGGAGGTGTTGGATCTCGCTGGAGCTGGCCTTGCAGGCAGTTGGGAGCCA
TCAGACATGCATGGTGTGATCTAAACTTGAGTCACCGCAGAGCCATCTCT
CTGGCCATCTGGAGAAGCAGCAGAATCTTGTGGTGTACCTTCAGGATGAA
TATAGGCCACCCCCCCCGTATTCTAGTGCCTTTGCCCATGTTCCATAGCC
TGTGAACCACACAGCTTAAATAAAGAATCTTTAAACAGAAACCCAAGATC
AAAGGTGAGAACCGATTGGCTGACAAAAATCTTGTGGACCGAGGCTGAAG
AGAACCATTCACTGTTTACCTTTATTTTGCTGAAAACAGCGATTTGGGGT
TTGCTGACTGTGATCCTGTGCTCACTTTTTTTGAGGATAACAGGAAATGG
CCATGCACTGTATCAGATGTGGCCAGATAGTCCCAGGGTAGTGAAGCAGA
TGACACATAACGGAGGTCTGTACTTATCCACATGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_k15.g1 MSMg01no321_k15.g1 CHROMAT_FILE:
MSMg01no321_k15.g1 PHD_FILE: MSMg01no321_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:27 2005
         (578 letters)



>mm_chr16_12693507_12694484
          Length = 978

 Score = 1019 bits (527), Expect = 0.0
 Identities = 566/579 (97%), Gaps = 3/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaatgtgctttaaatcaggcctgcaagctcacttggagaccccaccatgctggagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cctaatgtgctttaaatcaggcctgcaagctcacttggagaccccaccatgctggagttc 795

                                                                       
Query: 61  tgcagaataaatccctctttgcatttagatagcatttgaatctgggatatctttggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgcagaataaatccctctttgcatttagatagcatttgaatctgggatatctttggggaa 735

                                                                       
Query: 121 tcatggactcttacagtgcctgtgtgagtttttaagtgggaatgcaggtgctctcagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcatggactcttacagtgcctgtgtgagtttttaagtgggaatgcaggtgctctcagatg 675

                                                                       
Query: 181 gaggtgttggatctcgctggagctggccttgcaggcagttgggagccatcagacatgcat 240
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 674 gaggtgttggatcccgctggagctggccttgtaggcagttgggagccatcagacatgcat 615

                                                                       
Query: 241 ggtgtgatctaaacttgagtcaccgcagagccatctctctggccatctggagaagcagca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggtgggatctaaacttgagtcaccgcagagccatctctctggccatctggagaagcagca 555

                                                                       
Query: 301 gaatcttgtggtgtaccttcaggatgaatataggccaccccccccgtattctagtgcctt 360
           |||||||||||||||||||||||||||| |||||||||||   | |||||||||||||||
Sbjct: 554 gaatcttgtggtgtaccttcaggatgaacataggccacccaggctgtattctagtgcctt 495

                                                                       
Query: 361 tgcccatgttccatagcctgtgaaccacacagcttaaataaagaatctttaaacagaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgcccatgttccatagcctgtgaaccacacagcttaaataaagaatctttaaacagaaac 435

                                                                       
Query: 421 ccaagatcaaaggtgagaaccgattggctgacaaaaatcttgtggaccgaggctgaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccaagatcaaaggtgagaaccgattggctgacaaaaatcttgtggaccgaggctgaagag 375

                                                                       
Query: 481 aaccattca-ctgtttacctttattttgctgaaaacagcgatttggggtttgctgactgt 539
           |||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 aaccgttcagc-gtttacctttattttgctgaaaacagtgatttggggtttgctgactgt 316

                                                  
Query: 540 gatcctgtgctcactttttttgaggataacaggaaatgg 578
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 gatcctgtgctcactttttt-gaggataacaggaaatgg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)