CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATTTCTCCACTAGAAGATATATCATTATCACACACTGACTCTGT
GTTTTGAGAAAACACTAACAGATAGGCGTGTGTTGAAGGAAGTTTACAAA
GGAATATTAGAAGTTGTGTAGCTGCGCAAAGAATTTACAGGTAGGAAGAA
TGGCTATCTTTCCAGCAGCTTAGCATTACATCAGCACTGTGTGGTTAAAA
CTGAGAATTTCTAGGCAAACATTCCCTCAGTCTCCAAAGCAGCAAGTCTC
TCGTACCCATTCTCGTTTATTACTTACTCCATGCCAATTGGGATTTCATG
ATTATTTTTTTTACACAGATTTGAGCATCCTGTATTATCTATACTTTAAA
CAATCTAACAAATTTCAAGACCCCCACATGTTATAATGATCGAAGAAACT
AACTTTGTCGCAAGAGAGTGGAAATATTCTGTGGATGTGATATAACCTCA
AAGTAATGAACCGATCACTGAGAGTGGGTAAATGTGGGAATAGATATTAT
CCTGGAAAAATAAATTTACATAGAAAATAAAATATTACAACATTGGTAAT
AATCACAAGAAATTTGAGTGGGAAGTGGTTTTTTTTTCCAGAAATGCACT
AATAATTTTACTGGATTATCAAAAGCCATTCTGTCATAAGTTTATTGGTC
ACACAAGTAACATTGAAACAGATAGAGAACAGCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAGTG
CAGTAGCTAGATATAAAATTAACTCTAAACCAGTGGCCTTTCTGTACACA
AAGGATAAACAGGCTGAGAAAGAAATTAGGTAAACATCACCCTTCACAGT
AGTCACAAGTAATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGTGA
AAGATCTGTATGATAAGAATTCAAGTCTCTGAAGAAAGAAATCGAAGAAG
ATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCACGATTAAT
ATAGTAAAAATGGCTATCGTGCTGAAAACAATCTACAGATTCAGTGTAAA
CCCCATCAAAATCCCAACTCAACTCCCCACAGAGTTAGAAAGGGCAATTG
GCAAATTTATTTGGAATAACAAAAATCCTAGGATAGCAAACACTATTCTA
AACAATAAAAGAACCTCTGGTAGAATCACCATGCCTGACCTAAAGCTGTA
TTACAGAGCATTTATGATAAAAAACTGCATGGTATGGGTATAGGGACTGG
CAGGTAGATCGATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC
CTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCTAGTGGAAAA
AAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG

Query= MSMg01no321_l19.b1 MSMg01no321_l19.b1 CHROMAT_FILE:
MSMg01no321_l19.b1 PHD_FILE: MSMg01no321_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:33 2005
         (568 letters)



>mm_chr16_39575712_39576679
          Length = 968

 Score = 1060 bits (548), Expect = 0.0
 Identities = 563/572 (98%), Gaps = 8/572 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcattatcacacactgactctgtgttttgagaaaacactaacagataggcgtgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atatcattatcacacactgactctgtgttttgagaaaacactaacagataggcgtgtgtt 709

                                                                       
Query: 61  gaaggaagtttacaaaggaatattagaagttgtgtagctgcgcaaagaatttacaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaaggaagtttacaaaggaatattagaagttgtgtagctgcgcaaagaatttacaggtag 649

                                                                       
Query: 121 gaagaatggctatctttccagcagcttagcattacatcagcactgtgtggttaaaactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaagaatggctatctttccagcagcttagcattacatcagcactgtgtggttaaaactga 589

                                                                       
Query: 181 gaatttctaggcaaacattccctcagtctccaaagcagcaagtctctcgtacccattctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaatttctaggcaaacattccctcagtctccaaagcagcaagtctctcgtacccattctc 529

                                                                       
Query: 241 gtttattacttactccatgccaattgggatttcatgattattttttttacacagatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtttattacttactccatgccaattgggatttcatgattattttttttacacagatttga 469

                                                                       
Query: 301 gcatcctgtattatctatactttaaacaatctaacaaatttcaagacccccac----atg 356
           ||||||||||||||||||||||||||||||||||||||||||||||     ||    |||
Sbjct: 468 gcatcctgtattatctatactttaaacaatctaacaaatttcaaga----aacaaagatg 413

                                                                       
Query: 357 ttataatgatcgaagaaactaactttgtcgcaagagagtggaaatattctgtggatgtga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttataatgatcgaagaaactaactttgtcgcaagagagtggaaatattctgtggatgtga 353

                                                                       
Query: 417 tataacctcaaagtaatgaaccgatcactgagagtgggtaaatgtgggaatagatattat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tataacctcaaagtaatgaaccgatcactgagagtgggtaaatgtgggaatagatattat 293

                                                                       
Query: 477 cctggaaaaataaatttacatagaaaataaaatattacaacattggtaataatcacaaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cctggaaaaataaatttacatagaaaataaaatattacaacattggtaataatcacaaga 233

                                           
Query: 537 aatttgagtgggaagtggtttttttttccaga 568
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aatttgagtgggaagtggtttttttttccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)