BAC Information

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BAC

Clone NameMSMg01-323E18
Chromosome16 (Build37)
Map Location 71,238,945 - 71,239,279
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664930, Gbe1, D16Ertd519e, LOC100039231
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E18.T7 (MSMg01no323_e18.b1)MSMg01-323E18.TJ (MSMg01no323_e18.g1)
ACCAG441758AG441759
length1,1351,246
length of high quality
(start - end)
623 (135 - 757)333 (138 - 470)
definitionCHROMAT_FILE: MSMg01no323_e18.b1 PHD_FILE: MSMg01no323_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:41 2005CHROMAT_FILE: MSMg01no323_e18.g1 PHD_FILE: MSMg01no323_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTCTNNNNNNNAGTCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCCATGACAATGTCCCCTATACGATCTCCTGCTTTC
TTTTTTATTAGGTTACACCTTTCTGATTTCCCGTTCATGTCTTGATACAA
TTGGAGCTAAATTTTCTTCAGGGTGATAAATATGGATCTATTTGCATTTT
TCTATATGCAGTCATCCAGTTTGACTAACATCATTTTTTGAAGATGCTGA
ATTTTTTACAGTATGCATATCTGGGTTTTTATCAAAACCAGGTGTCCACT
GGTATGTGGATATAAGTCTGGGTCTTCAGCTTGATTCCATTCTTCCATTT
TGTTTTTGTTTTTGTTTTTTTGTTTGGTTTTTTTTTTTTTTGCTTTGTTG
TTTCTTTAGCATGAGGTTTTTATTGCTATAGCTTTGTAGTATAACTTGAG
ATCAGGAATGACGGCACTTCCTATCATTATTTTTTTATTATTTAGGATGA
TTTCTCCTATCCTGCTATTTTTTCATATGATTCATATGAAGTTGAGAATT
GTCCTTTCAAAATTTTTAAAGAATTGTGTTGAAATTTTAATGGGGATTGC
ACTGAATCAGTGAATTGCTTTTGGTAGTATGGCCATTTTTACAATGTAAA
TTCTATTGATCCATGAGTATTGGAGATCCTTCCATCTTTCAATATCCTCT
TGAATTCTTTCTTGAAAGACTTGAAATTTTCATCATACAAGATTTTACTT
GCTTTGTTATAGTTATCCCACCAATAAATTACTGTGAAGGAGTTGTTTCT
TAATTTCTTTTCTTCTCCAATGTTTACCACCCGCAAGAGTTTTTTTAATA
AAATTTTAAAATTACTCTTATATACAAGAAATCATCCTTCAAAAATGATA
CTTTGACTTCCAACTTTTCCAGTTTGTATCCAATTGACCTCCTTTCATTT
GCCTTTCTGCTATAACCCCAAACTTTCCATAATTTTGTTTTCCAAAATAT
AGGAGAAAAACAAAAATTTGATTCTCTTTCTCTGAATTTTAAGAAAATTC
CTTCTAAAAATTTCCTCTCCCATATATTTTTAGCTCCCCCTATATAATTG
GTTCGAAAACTAGTTTTTTTTATGCTTAAAAAAAA
NCCAATCCNNNNNNTTAAGCATGGATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAAGCTCTTACCTGAC
TCTAACTTTTAAAAATGCATGCTTTAAAAAAATCCCCGCATTTTAAAAGT
TAAATTTCTTTGTTCTGTTGATATAATCATCAATAAAACTTCTTCCATAT
TGGGAAAAAAAACAGGGTGTTTTGTAGTTAAAAAAAAATCTGTATTTTCC
TGGGTAATAATTTTGGCAAAACTATTATTTATTTCTTTACATAATAAAGA
ATACAAATAATTAATAATAATTACAAAATATTATAGTAAGAGGAAGTGAA
TAATATTTTTGGTGTTTTGTTGTTGTTGTTTTTAGTTTTATTTCTATTTT
TGTTTTTAATGATTTTTTACATTTGTTTTGGTGTGTGTGTGTGTGTGTTG
TGTATTCTTTTTAACCTGATTTTTCCCTCTTTATACAAGCTTAGTGAAAA
TTAAAAAGCTTGTTTCTGAAAACCCTTTGTTCAAAAATATCTTAAGTATG
TCCATGACATACTTCATTTCCTGATGAAATATTATTATAGAAGATATTTC
AAAAAATTGAAGTTCTGATTTTACATAGCTACATATTTTTCTTGTACAAA
AGTAGGTGAAGTTTTTGAAATAACAAATAATAATGAAAACCAATCTATAG
ATCTCTGAATTAGGTAAAACTAACATTCATATTTTAAAATATCACAAAAT
ATTTGTCTATTCTTCACTGAATTATTCGATACTTACTCTTGTTATTTATA
AAATTAATCATAGTGTAACTGGATTTAAAATTATTTCAAGGGATGCTGAA
CTTACTACTTTAAAATGTTTTTATTTTAAGTTTGACTGAAGAAGCAAAAT
CAATCTGTGCTCATAACGAAACCGTTAATTGTAGAATTAAAAGGCATCTC
CAGTCTTTTGGTAGGTTGATAAATATATGGATATACATTTAAAGCCCAAT
TTAAAAACCGCTGGTATAAAAATTCCTGGTGTCCTCTGAAAAAAAATATG
AAATTTCTAAAAACACTCTTAAATTGCGGAAAAATTTTCAAATGAAATAC
ATTTGCGAATAAAAACCTTATATACGGTCTGAAAAAAAAGATCACTTTTT
TTATATTCACTTCTAATTGTGCGAAAAATTTTAATTAGAGGCTCTACTCT
GCGATCGAAACTTACTAAAACTTTAATATTATGATATTACACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e18.g1 MSMg01no323_e18.g1 CHROMAT_FILE:
MSMg01no323_e18.g1 PHD_FILE: MSMg01no323_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:41 2005
         (333 letters)



>mm_chr16_71238745_71239479
          Length = 735

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%), Gaps = 2/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcattttaaaagttaaatttctttgttctgttgatataatcatcaataaaacttcttcca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gcattttaaaagttaaatttctttgttctgttgatatagtcatcaataaaacttcttcca 260

                                                                       
Query: 61  tattgggaaaaaaaa-cagggtgttttgtagttaaaaaaaaa-tctgtattttcctgggt 118
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tattgggaaaaaaaaacagggtgttttgtagttaaaaaaaaaatctgtattttcctgggt 320

                                                                       
Query: 119 aataattttggcaaaactattatttatttctttacataataaagaatacaaataattaat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataattttggcaaaactattatttatttctttacataataaagaatacaaataattaat 380

                                                                       
Query: 179 aataattacaaaatattatagtaagaggaagtgaataatatttttggtgttttgttgttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataattacaaaatattatagtaagaggaagtgaataatatttttggtgttttgttgttg 440

                                                                       
Query: 239 ttgtttttagttttatttctatttttgtttttaatgattttttacatttgttttggtgtg 298
           ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 441 ttgtttttagttttatttctatttttgtttttaatgagtgtgtacatttgttttggtgtg 500

                                              
Query: 299 tgtgtgtgtgtgttgtgtattctttttaacctgat 333
           ||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgtgtgtgtgtgttgtgtattctatttaacctgat 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 735
Length adjustment: 9
Effective length of query: 324
Effective length of database: 726
Effective search space:   235224
Effective search space used:   235224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)