Query= MSMg01no323_i18.b1 MSMg01no323_i18.b1 CHROMAT_FILE:
MSMg01no323_i18.b1 PHD_FILE: MSMg01no323_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:13 2005
(669 letters)
>mm_chr16_49014186_49015254
Length = 1069
Score = 1251 bits (647), Expect = 0.0
Identities = 664/671 (98%), Gaps = 4/671 (0%)
Strand = Plus / Plus
Query: 1 aaaactgttttccacaagctagtctctg--cattccacatatgacagatagtatgtacat 58
|||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct: 201 aaaactgttttccacaagctagtctctgacc--tccacatatgatagatagtatgtacat 258
Query: 59 acccaggcataaatatactcacacacaaacattaattcagtttttaaaaataacttaatg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acccaggcataaatatactcacacacaaacattaattcagtttttaaaaataacttaatg 318
Query: 119 ctatcatgatgttataggtagaaaattcttgactatggaactattttatacacaagttta 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctatcatgatgttataggtagaaaattcttgactatggaactattttatacacaagttta 378
Query: 179 acttctgtaaaagtacctcctggttttatatatgaggaatatgaaatataagttttgtgt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acttctgtaaaagtacctcctggttttatatatgaggaatatgaaatataagttttgtgt 438
Query: 239 ttagatgtgagcttcatgtatgttatatatgtgcagatatctgaattggatttggaagaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttagatgtgagcttcatgtatgttatatatgtgcagatatctgaattggatttggaagaa 498
Query: 299 ttaagactataaaatgtatattgttttctataaccagtagatgctgaattagatatttgg 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttaagactataaaatggatattgttttctataaccagtagatgctgaattagatatttgg 558
Query: 359 tagctcttttaaattgtacaatttatggattataatgtgtgctcatattacacgcatgca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagctcttttaaattgtacaatttatggattataatgtgtgctcatattacacgcatgca 618
Query: 419 ttatttaatatagtctaagagtagtgttagacagttttgttgtgcctacatcatatagtg 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttatttaatatagtctgagagtagtgttagacagttttgttgtgcctacatcatatagtg 678
Query: 479 tacttaagctaagatggctataagtaggcaaaataatgcagtggaactaccaccagcatg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tacttaagctaagatggctataagtaggcaaaataatgcagtggaactaccaccagcatg 738
Query: 539 tgatacattttatccaagcattgcaataggatgtgtgtgtatatgtgattgtggcaaagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgatacattttatccaagcattgcaataggatgtgtgtgtatatgtgattgtggcaaagt 798
Query: 599 gcatgttttcttttctcttgaggcacgaacacttgcgggtatgttacgagaagttgagag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gcatgttttcttttctcttgaggcacgaacacttgcgggtatgttacgagaagttgagag 858
Query: 659 aaaaaatgaag 669
|||||||||||
Sbjct: 859 aaaaaatgaag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_i18.g1 MSMg01no323_i18.g1 CHROMAT_FILE:
MSMg01no323_i18.g1 PHD_FILE: MSMg01no323_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:13 2005
(643 letters)
>mm_chr16_49176758_49177800
Length = 1043
Score = 1108 bits (573), Expect = 0.0
Identities = 632/667 (94%), Gaps = 24/667 (3%)
Strand = Plus / Minus
Query: 1 agacttttccccccacaggattttgctttcagccattcaatcatccttcctcattgtcaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 705 agacttttccccccacaggattttgctttcagccattcaatcatccctcctcattgtcaa 646
Query: 61 ggtgggttagaagacaactgccaattggcctaaatgttctggctaatggagaaaccgcaa 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 645 ggtgggttagaagacaactgccaattggcctaaatgttctagctaatggagaaaccgcaa 586
Query: 121 ggtcagctaactccctcctgattgtatagggaatcaatagaatccatttgggctgcagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggtcagctaactccctcctgattgtatagggaatcaatagaatccatttgggctgcagca 526
Query: 181 ggccatgcctttgggctacagtgagctatagtaagctttgtagctagagtgaactccata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggccatgcctttgggctacagtgagctatagtaagctttgtagctagagtgaactccata 466
Query: 241 ggccaaaagtgggtaggcagacaacagacccacctcataagctgtctttttggccttttc 300
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 465 ggccaaaagtgggcaggcagacaacagacccacctcagcagctgtctttttggccttttc 406
Query: 301 ttctgccttctgacatgcctgcaacatctctccagcttccttctgcacctgagcaacatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttctgccttctgacatgcctgcaacatctctccagcttccttctgcacctgagcaacatc 346
Query: 361 ggcctccagtttcttcttctggctgaggaggcttgtgttctaaggagggacagcattcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggcctccagtttcttcttctggctgaggaggcttgtgttctaaggagggacagcattcca 286
Query: 421 gttaggcaacgtgaggccagcaaagcacaggcaagcagctctgggtaggagcgactgagc 480
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 285 gttaggtaacctgagggcagcaaagcacaggcaagcagctctgggtaggagcgattgagc 226
Query: 481 atagtcggccttatacagtt------------------------aagcaagatctccagc 516
|||||||||||||||||||| ||||||||||||||||
Sbjct: 225 atagtcggccttatacagttgagcacacttagccctaggcagttaagcaagatctccagc 166
Query: 517 tctggctggtagcttgggcacaaaaggcagatcaaatgaaggagttttatttagaggctc 576
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 165 tctggctggtagcttgggcacaaaaggcagatcaaacaaaggagttttatttagaggctc 106
Query: 577 agaagaaaagagatggatgcctggatcagaaaggaggattcgaaatatgacaaagccaga 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 agaagaaaagagatggatgcctggatcagaaaggaggattcgaaatatgacaaagccaga 46
Query: 637 acgtgga 643
|||||||
Sbjct: 45 acgtgga 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
