BAC Information

Click to search

BAC

Clone NameMSMg01-323K12
Chromosome16 (Build37)
Map Location 47,022,127 - 47,022,773
singlet/doubletsinglet
Overlap genenone
Upstream gene4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757, LOC628776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323K12.T7 (MSMg01no323_k12.b1)MSMg01-323K12.TJ (MSMg01no323_k12.g1)
ACCAG442017AG442018
length1,1741,281
length of high quality
(start - end)
587 (129 - 715)647 (128 - 774)
definitionCHROMAT_FILE: MSMg01no323_k12.b1 PHD_FILE: MSMg01no323_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:27 2005CHROMAT_FILE: MSMg01no323_k12.g1 PHD_FILE: MSMg01no323_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATTTNNNNNNNNGTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTTGTGGTCCTGTCACCTTTAGATCTTGAGGTCACCATT
GTCACTTAGATTTTATCTTTGTGGGCACAACTGCTTACAGAGAATATGAT
TCTGCCTCATGCTGCTGTGCCTTAGTGACTTTTTGGAACTCCCTTGTAAT
TCTTGCATTTTGCATGCATGCTTGAAAAATAATCACACCATGTAGATTAT
AATGCCAAGTTCTAGTGCCAACTTGAGATGTTGTCTGGATTCCTTCTACT
ATAGCTGTCATGGTCTTTGGGAATGTTGGCAGCTGTTGTGAGAAAATACT
TGTCTAGTTAGTTATTTTGGTGTAAGGATTGCTTTCAACATTTATAGTTT
TTTGTCTCTCAATTCAAATAAGTTTGTGTTTTCAGAAATTGAACTTTAAT
AGGTTGAGTCTAAGTCTATGGGTACTTTTTCTTTAGTTCCAGTATTAGGT
GAGAGGTTTCACTTTATGTGTGCTCAACTCTTTAATAGCCTCACTAATGC
CCTCTTTTTCTATATCTTAAAGCTTGCCTGTATTTCTGGCCTATATATCC
TTCATCTCTCTACTCTACTTGCTGCTGTTTTTCACTGTAAATCTGGCTAA
GGACACTGAGCAATAATCATGCCACATGTTGAACATTATGCTGTCCTGAA
TTGGATTTCTTCAAACACATTAGTCCTTTACTTTTAAACTGAGCATCATT
CACACTCACAGGGCACAGGCNCCATATACAATATACAGAATATAACAGGA
GCATGAAATACCTGTAGCCCAGTTCTCAAAAGAGTCTTTATTTCCCGCTG
AAACCATGTGAGCTCGGTCTCCACTGTCTGTGTATCTCTCAGNATTCGGA
TGTCTTAATATGTTAACAAAATGCCTAATTTACCCCCAAATTAAAACTAT
TCCTAGCCCACGTAATCAAAACTCCTTTCAAATTCCTTTCGGAAAACAAC
TTGTAAAAGCCCCATGAAATCCTTTTGGGTTAACTTAATTTTTTATCACA
AGCCCTCTTCTTTTTGTTTTAAAAAACCCACTCTTTTTAACACCTTATAT
CTTTTTTTTTTTAAAAAAATTTTTCTTTTATTTAATAACTTACAAAGAGT
ATATCCTCTCTCTCCACAAACTCC
NCCATTTCNNNNNNNTTTCACGGCAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAACCTTCTCTAATTCT
GTCCTCTTGATGTATTGAGCGTTAATAATGTTGCCATAGCATTATTATTT
GATTTACAATTAGTAAAAATTCAATTAAAGTTCTATAATCTCATAGATGG
TGATGGATATTGTCATGTCAGAAATAGTAATACCCCACGCTGGACCTAAG
TTCTCAATGAAGATATAAAGTCTCCTTCGACTCAGAGTCTCTAAGTAAAC
TGAATAACTTGTATATATATTTTCACAGTGTATGATAGCAAACTCCTGAT
AGAGTCAATCTTTGCATATTCTAGCCCATTATCTATTGCTGTTGAATTCA
TTCTATACAGGTTTGAACAGTTAGCTCTAGCCGTAAGTCCTCATCCAAAT
ACCAGCATTGAATGGGCACTCTCTTCTCCCAAGCCCTGGTTCCAGGATTT
AGGTTGACACAAATTACTAATAGCAGTGGTGGGTGTTGGCATTCAGTCCA
GCACTGGTGGGAATGGACATCTATGTTTGGTAAACTCAAAGTATAAATTA
TTGAGCGACTAAAACATTAAAATCTAACTCACCTTTTGAACATTAGACAC
ATCCCATAGATAATTTCCTGACAACTCATTCATTTGGCTTTTCAGTTGCA
CTCATATGAAACCTCTGGGATCACAAGAAAATGAATACCAAATCAGTTAG
GAAGTCTGAACTAAGGTAAAATACAAAGACTTTGCAGTCGTAAGGTTTGT
GCATGTGTATATGCATAAATTATCACACATGTACAGAAATTGTTTCTCAA
TCAAATTGACCAACTGAATTGTAATCTCTTGCCTTAANCGAACTAATGAT
TCACAATTGGAAGTTCTATCAACACTCTAAAAACTCTATTGTCAAAATTC
TTTCTAAGCTAAATGTCCAATATGGTCAGGAAATCAGCTTAAAAATTTTC
CCATAATCCACCTAAAACATGGTTTGTGGAAATTCAGGGCTATAGCAATT
TATGGGAAAATTTTATCCATTAACCTAAAATTTTTTTGCCAAAAAATTTC
CCTGGAATTGGGGAAATTTTATTGGTTTTTTTAACCCCTTTTAAAAACTC
ACCCGCGGGAAAAAATTTTTCTCAGTATAAGATTTTAAACACCGCCTGGT
TTTATTTATTAAAAAATTTATAAATTTCCCCGACAATGTACAAAAAGATA
TTCTTTTTTCTTTGTGACATAACTCTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_k12.g1 MSMg01no323_k12.g1 CHROMAT_FILE:
MSMg01no323_k12.g1 PHD_FILE: MSMg01no323_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:27 2005
         (647 letters)



>mm_chr16_47021927_47022973
          Length = 1047

 Score = 1205 bits (623), Expect = 0.0
 Identities = 641/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttgccatagcattattatttgatttacaattagtaaaaattcaattaaagttctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 atgttgccatagcattattatttgatttacaattagtaaaaattcaattaaagttctata 788

                                                                       
Query: 61  atctcatagatggtgatggatattgtcatgtcagaaatagtaataccccacgctggacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atctcatagatggtgatggatattgtcatgtcagaaatagtaataccccacgctggacct 728

                                                                       
Query: 121 aagttctcaatgaagatataaagtctccttcgactcagagtctctaagtaaactgaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aagttctcaatgaagatataaagtctccttcgactcagagtctctaagtaaactgaataa 668

                                                                       
Query: 181 cttgtatatatattttcacagtgtatgatagcaaactcctgatagagtcaatctttgcat 240
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 667 cttgtatatatattttcacagtatattatagcaaactcctgatagagtcaatctttgcat 608

                                                                       
Query: 241 attctagcccattatctattgctgttgaattcattctatacaggtttgaacagttagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 607 attctagcccattatctattgctgttgaattcattctatacagggctgaacagttagctc 548

                                                                       
Query: 301 tagccgtaagtcctcatccaaataccagcattgaatgggcactctcttctcccaagccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tagccgtaagtcctcatccaaataccagcattgaatgggcactctcttctcccaagccct 488

                                                                       
Query: 361 ggttccaggatttaggttgacacaaattactaatagcagtggtgggtgttggcattcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggttccaggatttaggttgacacaaattactaatagcagtggtgggtgttggcattcagt 428

                                                                       
Query: 421 ccagcactggtgggaatggacatctatgtttggtaaactcaaagtataaattattgagcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 427 ccagcactggtgggaatggacatctatgtttggtaaactcaaagtataaattattgagct 368

                                                                       
Query: 481 actaaaacattaaaatctaactcaccttttgaacattagacacatcccatagataatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 367 actaaaacattaaaatctaactcaccttttgaacattagacacatcccatagataatgtc 308

                                                                       
Query: 541 ctgacaactcattcatttggcttttcagttgcactcatatgaaacctctgggatcacaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgacaactcattcatttggcttttcagttgcactcatatgaaacctctgggatcacaag 248

                                                          
Query: 601 aaaatgaataccaaatcagttaggaagtctgaactaaggtaaaatac 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaatgaataccaaatcagttaggaagtctgaactaaggtaaaatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)