BAC Information

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BAC

Clone NameMSMg01-323K16
Chromosome16 (Build37)
Map Location 50,855,877 - 50,856,563
singlet/doubletsinglet
Overlap genenone
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323K16.T7 (MSMg01no323_k16.b1)MSMg01-323K16.TJ (MSMg01no323_k16.g1)
ACCAG442024AG442025
length1,1641,265
length of high quality
(start - end)		653 (132 - 784)680 (95 - 774)
definitionCHROMAT_FILE: MSMg01no323_k16.b1 PHD_FILE: MSMg01no323_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:28 2005CHROMAT_FILE: MSMg01no323_k16.g1 PHD_FILE: MSMg01no323_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATCNNNNNNNNCGTCACTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCACCTGAGGAATACCCTTAAAGGCACAAGCACCTGAA
AAAATGTTCAACATCCTTCTTCAACAGGCAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAA
CTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAG
TGGGAACAAAACACCCTTGGAAGGAGTTACAGAAACAAAGTTTGGAGCTG
AAATTAAAGGGTGGACCATGTAGAGACTGCCTTTTCCAGGGATCCACCCC
ATAATCAGCATCCAAACGCTGACACCATTGCATACCCTAGCAAGATTTTA
TCGAAAGGACCCAGATGTAACTGCCTCTTGTGAAACTATGCCGGGGCCCA
CCAAACCCAAAAGTGGATGCCCCCAGGCCGCCTAATGGATGGATCCCAAG
GGCTCCCAAGGGAGGAACTTAAAGAAATATCCCCGGGGAATTTAAAGGGA
ATCCGGCACCCCCTTATAGGGGGAACTACATTTTTTGAACCTTACCCGTG
ATCCCCGTGAAAGCTTTTGGAATCTTCAAGGTGGCTAAATTGTTACCACA
AAAAAAGGGCCCCG

NCCCATTCTNNNNNNNAACCAAGTGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAGACCCAACATT
TATTGAATGCCCTCTGGATGAGCCTTTAAATATGCTTCCATTTAAAACTT
GTGTTGGTTCCACAAATTATATTTTCGATAGATTTTTTGTTGTTGTTGAA
CCTATTTATTCTTTTCTGATATAAAATCTCCTCTTCATGGGTCTTTAATT
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAC
ACACACACACACACACACACTCAGGAAGGCTTGCATTGCAGGACTATATA
TCTTTGAGGAAAGAAAGAAGAAAAGAAGGAAGGGAAAATGATAAAACATA
GTATTTTTATTTCCTATTAAACCTATTCTGAGTTAATGCCTATGAAGAAA
TGGTTTTGAATAGCTAAATACACTTGGCACTGTGTGTCAGGTTCTTTGGA
GTTGATATCTCACTTACTTTGTCAAAATTTACCACTACATAGCAAACGAA
GTTCAATAGTCTCTACTTTTCCCCTTGCTTTCCAGTTCATCTGGTTCTTT
TCAACCTTCACCCTGTCTGTTCATGCTTGTCATTTCTCTTCCACTTTTAG
AGAAATTTTTGGATTTGTCATCAAGGTTTGTGTTATTCTAAGCATCCATG
GTCTGTCTTTAGCAACATGGTAGATGGCCCTTTCTGTGGACACCAGCTGT
CCTTGCTGATGAGGCTCCATTTAGCTGGCATGGACTTGGGTGAATGTGGG
GTCTGGGAATAAGGGTCCATTTAAGCTATTTTGGNAATTCCTCCTTTCTC
TCCCATGCCTCTGGGGGCAGCACTCATTGCCATACTAGTTTAAAAACAAG
TAGGGAAAAACAAGGAAAATTTTTGAAAATTTCAACTAGGGAAAGTTCAA
AAAAACCCAAATTTATTTGTTTTCAAAAATACTGGAATGTATTGGATTTA
ACCCAATTTCTAACCTAACTATTTTTTATCGGGAAAAATATATAACTTTT
AAAAACACATGGAACACATCCCTTGGTTAAGGGCAAATTAAAAATTTTTT
AATTTTTTATGGGGCCCCCTGTAAAAAAAAAAATTTTGTCCCTCCAATCC
TTTCAAAAAGGGGGTGCCCCCTAAAATAATCCTAGTGAGGCATACACTTC
TCTCTTATAAAATATTTTATTCTTCTTATCATATATTTTTTTCTTTAAAA
TTCTTATCTGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_k16.g1 MSMg01no323_k16.g1 CHROMAT_FILE:
MSMg01no323_k16.g1 PHD_FILE: MSMg01no323_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:29 2005
         (680 letters)



>mm_chr16_50855684_50856763
          Length = 1080

 Score = 1197 bits (619), Expect = 0.0
 Identities = 667/695 (95%), Gaps = 23/695 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatttattgaatgccctctggatg-----agcctttaaatatgcttccatttaaaact 55
           ||||||||||||||||||||||||||     ||     |||||||||| |||||||||||
Sbjct: 194 aacatttattgaatgccctctggatgagaaaag-----aaatatgcttacatttaaaact 248

                                                                       
Query: 56  tgtgttggttccacaaattatattttcgatagattttttgttgttgttgaacctatttat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtgttggttccacaaattatattttcgatagattttttgttgttgttgaacctatttat 308

                                                                       
Query: 116 tcttttctgatataaaatctcctcttcatgggtctttaatttctctctctctctctctct 175
           |||||||||||||||||||||||||||||||||||    | |||||||||||||||||||
Sbjct: 309 tcttttctgatataaaatctcctcttcatgggtct---ctctctctctctctctctctct 365

                                                                       
Query: 176 ctctctctcacaca--------cacacaca--cacacacacacacacacacacacacaca 225
           ||||||||||||||        ||||||||  ||||||||||||||||||||||||||||
Sbjct: 366 ctctctctcacacacacacacccacacacacccacacacacacacacacacacacacaca 425

                                                                       
Query: 226 ctcaggaaggcttgcattgcaggactatatatctttgaggaaagaaagaagaaaagaagg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctcaggaaggcttgcattgcaggactatatatctttgaggaaagaaagaagaaaagaagg 485

                                                                       
Query: 286 aagggaaaatgataaaacatagtatttttatttcctattaaacctattctgagttaatgc 345
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 486 aagggaaaatgataaaacatagtatttttatttcctagaaaacctattctgagttaatgc 545

                                                                       
Query: 346 ctatgaagaaatggttttgaatagctaaatacacttggcactgtgtgtcaggttctttgg 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctatgaagaaatggttttgaatagctaaatacacttggcactgtgtgtcaggttctttgg 605

                                                                       
Query: 406 agttgatatctcacttactttgtcaaaatttaccactacatagcaaacgaagttcaatag 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agttgatatctcacttactttgtcaaaatttaccactacatagcaaacgaagttcaatag 665

                                                                       
Query: 466 tctctacttttccccttgctttccagttcatctggttcttttcaaccttcaccctgtctg 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctctacttttccccttgctttccagttcatctggttcttttcaaccttcaccctgtctg 725

                                                                       
Query: 526 ttcatgcttgtcatttctcttccacttttagagaaatttttggatttgtcatcaaggttt 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttcatgcttgtcatttctcttccacttttagagaaatttttggatttgtcatcaaggttt 785

                                                                       
Query: 586 gtgttattctaagcatccatggtctgtctttagcaacatggtagatggccctttctgtgg 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gtgttattctaagcatccatggtctgtctttagcaacatggtagatggccctttctgtgg 845

                                              
Query: 646 acaccagctgtccttgctgatgaggctccatttag 680
           |||||||||||||||||||||||||||||||||||
Sbjct: 846 acaccagctgtccttgctgatgaggctccatttag 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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