BAC Information

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BAC

Clone NameMSMg01-324K05
Chromosome16 (Build37)
Map Location 31,534,838 - 31,535,170
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324K05.T7 (MSMg01no324_k05.b1)MSMg01-324K05.TJ (MSMg01no324_k05.g1)
ACCAG442736AG442737
length732983
length of high quality
(start - end)
368 (46 - 413)---
definitionCHROMAT_FILE: MSMg01no324_k05.b1 PHD_FILE: MSMg01no324_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:00 2005CHROMAT_FILE: MSMg01no324_k05.g1 PHD_FILE: MSMg01no324_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGAATCTCTGCACACAATGTCAGTTAACACAGACAAGCTGCTA
TGCCTATAAACCTCCCTAACTGTCCAGCCCTGGGCCCTGCTCTATCCAGC
CCTGCTCTATCCAGCCCTGCTCTAGCCTGGCCCTGCTCTAGCCTGGCCCT
GCTCTAGCCTGGCCCTGCTCTGGCCATGGGAATGCTAAGCTACGGTCCCC
ACTGTTAGGGACACTGAAAGCTTCATCAAGACCTGAGAATGAGGCCTCAG
AATTCTGAGCTGTAGGTGGTAGCCACAGGATTCAGGTCACAGCCCAGCCC
ACTCACTAACTCTTTCACTACCATGTCCGCCTTCCTTCCCCTGTCACAGC
AGAACCCAGGCCTCGCCCCGGCATAGGGTATGTCAAGGAAGTTTCCTGAG
GGCTGGAACTGCCTTTGTCCTGGAATGCTCAGTGAACACCTTTGATGCGA
AATAACTGGGAACAGAAGTGGAAGCATTGGGAATTCTGGGACAGTTCCCT
GACCCACACTCAGGCCAACTTGAAATGTCAGAGTCTCATGGCGTTGACAG
AGGCAGAACACGCAGGTTCTCCAAGTCATGCAATCTTATCTGAAAAAAAA
CTTGCAGATCTCCTATAGACATGCCTGCCATGGTATAGAAGAATCTGTAT
AAAACCAAGACAAACTTTGTTCCCCACAGTCA
CACTGAACGTGGTGAGGTTGGGNTGGCNGCNTGGTCCCCGAGNAGGAGGN
GAGANGAGAGGGGGGTTTCCCCGGGNGGAGGGNNGGANNANGNANNGAGN
NNNGAAGGGAAAAGANAGANNGGTTTATGCGGCCAAAAAAAAGAGGAGGG
ANAGAGAAGAANGANAAAAGGANNGAAAGNAAAAAAAAGAGGAAANNNAA
AAAGGAAAANAGAGGAGAAGAAGAGAAGAAAGAGAAGAGGGAGGGAGGGG
AGAGAGGGGGGGGGGAGAAANANAAAAAAAAAAAGAGAAGAANANGGAGA
GGATGAGATAAAAAGAAGGGGAGAAGAAAAGAAGAGAAGAAGGGGAAAGG
AAAAAAAAGAGAGGGAGGGAGGGAGAGAAGAAAGAAGAAGGAAAGTATTT
TTTTATTTTNAGAAGAGAAAGAGAGAGAAAGAAAGAGAAAGGAGGAGNAA
AGAAGATAGAGTAGCGACCCCCCCCAAAAAGAAGGGGGGAAAGGGAGGGA
GGAGGGGAACCAGAATGGCGCGAGAAAGAGGGGAAGAAGAACAAGAGGAG
AGAAAGAGAAAGAGGAAGGGGGAGAGAGAGAGAGAGAGGGAGAAAGAGAA
AAAAAGGGAATGGGGGGAGTGGAGAGGAGGGAAGGGAAAGAAAAGAAAGA
TAGGGAGAAGAAAGATAGAAAGGGAGGGAGAAGAAGCACGAAATAGGGGA
AGAGAGGAGAGAAAGAGAAGGAGAAGAGAAGAGGAGGAAAAGGGGGAGAG
AAAATAAAAAGAAAATAAGGAGGAAGAGAAAAAAAGAAGGAGGGGAGGGA
GGAGAAAGAGAAAGAAGGAAAGGAAAAAAGAAGGAAGCGGGGGTAGATAG
GAGAAAGAGGAGGGAAGAGAAAAGGAAGGGAATAGAATGGAGAGAGACGA
GAAGAGAGAGGAGACATGTAAGAGGAAAGAGAAGAAAGAAGAGGAGAGGA
AAGAGGAAGAGAAAGAGGAGGAAGAAAGAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_k05.b1 MSMg01no324_k05.b1 CHROMAT_FILE:
MSMg01no324_k05.b1 PHD_FILE: MSMg01no324_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:00 2005
         (368 letters)



>mm_chr16_31534454_31535221
          Length = 768

 Score =  532 bits (275), Expect = e-155
 Identities = 327/365 (89%), Gaps = 32/365 (8%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccgaatctctgcacacaatgtcagttaacacagacaagctgctatgcctata 63
           ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggaattctctgaacctttgcacacaatgtcagttaacacagacaagctgctatgcctata 658

                                                                       
Query: 64  aacctccctaactgtccagccctgggccctgctctatccagccctgctctatccagccct 123
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
Sbjct: 657 aacctccctaactgtccggccctgggccctgctctatccagccctgctctatcca----- 603

                                                                       
Query: 124 gctctagcctggccctgctctagcctggccctgctctagcctggccctgctctggccatg 183
                                      |||||||||||||||||||||||||||||||||
Sbjct: 602 ---------------------------gccctgctctagcctggccctgctctggccatg 570

                                                                       
Query: 184 ggaatgctaagctacggtccccactgttagggacactgaaagcttcatcaagacctgaga 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agaatgctaagctacggtccccactgttagggacactgaaagcttcatcaagacctgaga 510

                                                                       
Query: 244 atgaggcctcagaattctgagctgtaggtggtagccacaggattcaggtcacagcccagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgaggcctcagaattctgagctgtaggtggtagccacaggattcaggtcacagcccagc 450

                                                                       
Query: 304 ccactcactaactctttcactaccatgtccgccttccttcccctgtcacagcagaaccca 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 449 ccactcactaactctttcactaccatgtccgccttccttcccctggcacagcagaaccca 390

                
Query: 364 ggcct 368
           |||||
Sbjct: 389 ggcct 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)