BAC Information

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BAC

Clone NameMSMg01-325I06
Chromosome16 (Build37)
Map Location 8,613,866 - 8,614,204
singlet/doubletsinglet
Overlap geneAbat
Upstream gene4930511J11Rik, BC024814
Downstream geneLOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106, Grin2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325I06.T7 (MSMg01no325_i06.b1)MSMg01-325I06.TJ (MSMg01no325_i06.g1)
ACCAG443385AG443386
length741803
length of high quality
(start - end)
342 (71 - 412)205 (76 - 280)
definitionCHROMAT_FILE: MSMg01no325_i06.b1 PHD_FILE: MSMg01no325_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:02 2005CHROMAT_FILE: MSMg01no325_i06.g1 PHD_FILE: MSMg01no325_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGA
ATTCCTCAAATGGCTTACCAACAAAACACCACTCAGCTAAAGGCTGTCGT
GTAGTGGAATTTCTCTCCTGGGTAGCGGAGGGCCCACATAGAGACCTGCA
GAGTCTGAATGAATAGAATCAAGGGGTGGAACCAAACTGAGAGGCACAGA
AAGTTGTGCCTAGGGATGGGTGCAGATCCTGTGAAGTACTCTGACGTGTG
AGCTCTTCTGATTGATTCTGGGTCTCATTCTAGCCTTACCGGAGCTTCAA
TACCTGGCTGGGGGACCCATCCAAGAACTTGCTGCTGGCTGAGGTCATCA
ACATCATCAAGCGGGAAGAGCTGCTCAACAATGTGGCCCGTGCGGTGAAG
ACCCTACTCACAGGGCTGCTGCACCACCAGGCATCTGCCCCAATTGGATG
GCATGATGTGACAGGAGGGAGTGCCTTAGCGGGTCCATGCTGGTGCACCC
TACCCAAGGTATCAGCCTTATGATGGGTCTAGCCATAAATGAAGTTTATT
TGGTACGTGGTTAAGTTGTTCTGGAATAGGGAGCACAGGCATATAATGAT
CGGTCTTAGTAGGTCTGATTTGAGATAGAGTATAGGAGAGTATTTGGCCC
CCCGGTTACCCTTGTGACAATTAAACAATTTGACTAGGTTATGGCATGCA
AAGAGGAGATTGTTCATACTAAATAAGGTTTCTGTGTATTT
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAACACTGCCAAAAACCGGAGGAAG
AGGAGGAGGGAGAGAAAGCTGGAGGCTGGGCAGGGTGGCACACATACTTT
CAGCCGCAACTTTCAGGAAGCAGAGAAAGGTCGATCTCCATGAAGTTGAG
GCTATCTAGGAGCCAAGGCTATCTAGGGAGACCTTTTTTTGAGAGGGAGG
GAGGGAGAGAGAGAGAGAGTGGTTGAGGCTTATGGACTATGGTGGGTCCT
TAGCTCTGCTCTTCATCAGACTCCAACTTTTTGCTTTTGCTTAATTTTGC
CTTATGAAAACCTCCTATGTGTGTTTCGTGCTTCCCCGTCCACTAACTAT
TTTTATTAATATGCAAGTTTTCTCTTCCCCCCCCCCTCTCTTTACTATTC
GTTTTTCTTTCATTTTTATTTTCCAATATTACTTTTCTATTCCTTCGACC
ACTTCTTTACCTGTACTTTTTGACCATTTTAACCACTTTTTTGGATCTTA
AATAGTTACTCCAACCTTTTCTGATCCGCATGTATGTTTCCCTTTCTATC
CTTATATTTCTGTTTCCTCACCGATATTCCTTTTACACCATCTAATCTCT
ACTACCTTCCTTTTCTTTCCACAGCATTTATGTGTTTTTACTCTTTTCTC
TTCGCTACTTCTTCATATACCCCCTCCCCCGTAAATGCTATCGATATTTT
CGCCACTTATTGAGTTTTTCTTCATACTTATAACATATCACCCCCACTAT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_i06.b1 MSMg01no325_i06.b1 CHROMAT_FILE:
MSMg01no325_i06.b1 PHD_FILE: MSMg01no325_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:02 2005
         (342 letters)



>mm_chr16_8613663_8614404
          Length = 742

 Score =  571 bits (295), Expect = e-167
 Identities = 328/339 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaacaccactcagctaaaggctgtcgtgtagtggaatttctctcctgggtagcggagggc 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 aaacaccactcagctaaaggctgtcgtgtagtggaatttctctcctaggtagcggagggc 263

                                                                       
Query: 64  ccacatagagacctgcagagtctgaatgaatagaatcaaggggtggaaccaaactgagag 123
           ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 ccacatagaaacctgcagggtctgaatgaacagaatcaaggggtggaaccaaactgagag 323

                                                                       
Query: 124 gcacagaaagttgtgcctagggatgggtgcagatcctgtgaagtactctgacgtgtgagc 183
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 gcacagaaagttgtgtctagggatgggtgcagaccctgtgaagtactctgacgtgtgagc 383

                                                                       
Query: 184 tcttctgattgattctgggtctcattctagccttaccggagcttcaatacctggctgggg 243
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 384 tcttctgattgattctgggtctcattctagccttaccggattttcaatacctggctgggg 443

                                                                       
Query: 244 gacccatccaagaacttgctgctggctgaggtcatcaacatcatcaagcgggaagagctg 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 gacccatccaagaacttgctgctggctgaggtcatcaacatcatcaagcgggaagacctg 503

                                                  
Query: 304 ctcaacaatgtggcccgtgcggtgaagaccctactcaca 342
           ||||||||||||||||||| || ||||||||||||||||
Sbjct: 504 ctcaacaatgtggcccgtgtggggaagaccctactcaca 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)