Query= MSMg01no326_d06.b1 MSMg01no326_d06.b1 CHROMAT_FILE:
MSMg01no326_d06.b1 PHD_FILE: MSMg01no326_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:52 2005
(662 letters)
>mm_chr16_39413991_39415052
Length = 1062
Score = 1183 bits (612), Expect = 0.0
Identities = 639/654 (97%), Gaps = 12/654 (1%)
Strand = Plus / Plus
Query: 5 gaattcagaggggagcatctgatcccctgactctggagttttcatgtgcgtactgggaat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaggggagtatctgatcccctgactctggagttttcatgtgcgtactgggaat 264
Query: 65 caaacctgggttttccagaagaacaatgagtgctcttaacaactaagtcatctctccagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacctgggttttccagaagaacaatgagtgctcttaacaactaagtcatctctccagc 324
Query: 125 caaaccaagagcttcttatggccagcatcacagggaaaggtgtaacagattagagtaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaccaagagcttcttatggccagcatcacagggaaaggtgtaacagattagagtaata 384
Query: 185 caatttagtagatttctagagagatgggtttgtactagaaaggatattatttcttgacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatttagtagatttctagagagatgggtttgtactagaaaggatattatttcttgacaa 444
Query: 245 tccatgaaggaaaggtgttctagtttgtgactcagatggtggagaataaaaaagacgact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccatgaaggaaaggtgttctagtttgtgactcagatggtggagaataaaaaagacgact 504
Query: 305 gagaggtgggagcagaagtaagcgtttgttctgaagcctatccttccttccttccttcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagaggtgggagcagaagtaagcgtttgttctgaagcctatccttccttccttccttcct 564
Query: 365 tccttccccccttccttccttccttccttccttcctatccttccttctttccttcctatc 424
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccttcc----ttccttccttccttccttccttcctatccttccttctttccttcctatc 620
Query: 425 cttccttccttccttccttccttccttccttccttccttccttccttccttccttccttc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cttccttccttccttccttccttccttccttccttccttccttccttccttccttctttc 680
Query: 485 cttccttccttctttccttcctatccttccttccttccttccttccttccttccttcctt 544
|||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttccta-------tccttcct-tccttccttccttccttccttccttccttccttcctt 732
Query: 545 ccttccttccttccttccttccttcctattcttccttcctatccttccttctttccttcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ccttccttccttccttccttccttcctattcttccttcctatccttccttctttccttcc 792
Query: 605 tatccttccttccttccttccttccttccttccttccttccttccttccttcct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tatccttccttccttccttccttccttccttccttccttccttccttccttcct 846
Score = 83.9 bits (43), Expect = 4e-20
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 345 tccttccttccttccttccttccttccccccttccttccttccttccttccttcctatc 403
|||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||
Sbjct: 940 tccttccttccttccttccttccttcccccctcccttccttccttc-tccctttctatc 997
Score = 76.1 bits (39), Expect = 8e-18
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 623 tccttccttccttccttccttccttccttccttccttcc 661
|||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tccttccttccttccttccttccttccttccttccttcc 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 842
Number of extensions: 276
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 5
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_d06.g1 MSMg01no326_d06.g1 CHROMAT_FILE:
MSMg01no326_d06.g1 PHD_FILE: MSMg01no326_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:52 2005
(662 letters)
>mm_chr16_39570954_39572015
Length = 1062
Score = 775 bits (401), Expect = 0.0
Identities = 413/421 (98%), Gaps = 8/421 (1%)
Strand = Plus / Minus
Query: 1 cattgcattttgttgttaaaatcacggttataaatgtgatcttttaaactaacattattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cattgcattttgttgttaaaatcacggttataaatgtgatcttttaaactaacattattt 358
Query: 61 ccccactagttgtgtatttctctagtagcatagctgacttttgtatgcttattttatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccccactagttgtgtatttctctagtagcatagctgacttttgtatgcttattttatatc 298
Query: 121 ctaacattgtgttatattaattttacttccatttgtttaattaccttggaccttcctgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaacattgtgttatattaattttacttccatttgtttaattaccttggaccttcctgtt 238
Query: 181 gataacattgaacatctatggataattgatttttttcttttattgaaaataggtttcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gataacattgaacatctatggataattgatttttttcttttattgaaaataggtttcttt 178
Query: 241 tctcacctaatacatgttgattacagtttatcctccctctactttctccaggtcctctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tctcacctaatacatgttgattacagtttatcctccctctactttctccaggtcctctcc 118
Query: 301 actcccctccatctggaaccacttcctttctgtctctca----ccccaaaacaaacaggt 356
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 117 actcccctccatctggaaccacttcctttctgtctctcattag----aaaacaaacaggt 62
Query: 357 ttctatggcatcataataataatataaaaaactctctagaataggataaaataaacataa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttctatggcatcataataataatataaaaaactctctagaataggataaaataaacataa 2
Query: 417 a 417
|
Sbjct: 1 a 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
