BAC Information

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BAC

Clone NameMSMg01-326J20
Chromosome16 (Build37)
Map Location 49,196,881 - 49,197,009
singlet/doubletsinglet
Overlap geneMyh15
Upstream geneEG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik
Downstream gene1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326J20.T7 (MSMg01no326_j20.b1)MSMg01-326J20.TJ (MSMg01no326_j20.g1)
ACCAG444190AG444191
length735729
length of high quality
(start - end)
---129 (415 - 543)
definitionCHROMAT_FILE: MSMg01no326_j20.b1 PHD_FILE: MSMg01no326_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:21 2005CHROMAT_FILE: MSMg01no326_j20.g1 PHD_FILE: MSMg01no326_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTGTCTCATGGAGTATCATATAATAAGCTTCTTGGACTGCT
CTAATAACACACAGATTAGCTTTGTATTGTCTGATCAGACCTCAACCTCT
CATCCTTGATATTTAGAATGTGTCTGTCTTAGATTCCATGGTACATTTCT
CTACCTCTTTTAATATGATTGATTTGAGCTCATTAATATGTGAATGAACT
TCCCGCGGACTTCTATGTCATCGTCATATTTAATTTTACTGACTTATAGA
ATCTGCTCCTTTGATTATTTGAATATTCAAATTTGAGAGAATTTAACTTT
CCTACTATCGTTAAAAAAACATTTGATATACAAGCTCTTGATTTATTATT
AATCTCTATTCGGACCACGGACAAGGTACCCATCCTCACATCCTCCTGTT
GTTGGCATAATGATCATGAATTGTCATATCTGAATTTCCAATTCCATTAC
ATGACTAGCTATCTCATAGACATGGTAATCACGACTCACCACCTATTCAC
ATGATTATCTCACACATGTCCTCTTGCTTGTGATATGTATACTAGACAAA
GCCTCTGACTGCGCCATCACTATGTATTCTTCCCCTGTGACTTCAGAATC
CTTGATGACATTTCTCCTGACTGGCCTGAATGAAAAAAGGCATTGCATGC
TTTTTACGGATAGATGTTCGTCCATTTTCAAATTA
NCGATGCAGTGGGAGCCTGGAGGCGCCTGTTCTCACCGGGAGGTGAACTA
TAGAATGACAACAGAATTCGACCGAATTCCAAGGACCCTTTGTAGTTGTG
AGTCCCCTTTGCACTGAGAAATGCACAGAATTCTGCACTAATAAATTAAA
GGACCAAGGATCAAAGCTTACAAGTTAGCCTGGCATGAAGGGCTTAAAAA
AAAAAATCTAGAATGCTTTTCCATTTCAAGCGTTTATCAATTCCTTACTC
CCTGGACACGTAGAATTTAATAAGTGGGGGAAGAACTTTATTTGAGCTTG
TTTGGCTATTCATAATTTAAGATTTAAAGAGAAAAGCAAGACATTCCTTG
CTATACTAATCCCTGCGATGCCCCCAAGGCCCGAAGCAACAGGCTGTACA
GCATTTCACACGCATTGTACCTTTTTCTCAAGTTCCTTTGCTTTAGCTCT
GAGTTTATTGACTTGCGATTCTGCGGCCTCTGCCCTCTCCTTGGCTTCAT
TCAGCTCATGTTGCTGCTTCTTATACTTGGAAAGGTATTGATTAGCCTGT
GCCTCCTGTCTAATGGAAAGCACAGAACATGAAGATACGGTCCCTCCTAA
GTAGAAGTCTCTGCTCTGAAACATACTTGAATACCGAAGATTATATATAT
CTCTGCCTGGATCGAATGTGCCATTTTTGGTCTAAGACATACAAGCAAGA
CTTAATAATACGTATGGAGGTTGGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_j20.g1 MSMg01no326_j20.g1 CHROMAT_FILE:
MSMg01no326_j20.g1 PHD_FILE: MSMg01no326_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:21 2005
         (129 letters)



>mm_chr16_49196681_49197209
          Length = 529

 Score =  250 bits (129), Expect = 3e-71
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtacctttttctcaagttcctttgctttagctctgagtttattgacttgcgattctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttgtacctttttctcaagttcctttgctttagctctgagtttattgacttgcgattctgc 270

                                                                       
Query: 61  ggcctctgccctctccttggcttcattcagctcatgttgctgcttcttatacttggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggcctctgccctctccttggcttcattcagctcatgttgctgcttcttatacttggaaag 210

                    
Query: 121 gtattgatt 129
           |||||||||
Sbjct: 209 gtattgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)