BAC Information

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BAC

Clone NameMSMg01-327N07
Chromosome16 (Build37)
Map Location 87,973,891 - 88,134,713
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327N07.T7 (MSMg01no327_n07.b1)MSMg01-327N07.TJ (MSMg01no327_n07.g1)
ACCAG445086AG445087
length722739
length of high quality
(start - end)		678 (45 - 722)448 (73 - 520)
definitionCHROMAT_FILE: MSMg01no327_n07.b1 PHD_FILE: MSMg01no327_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:48 2005CHROMAT_FILE: MSMg01no327_n07.g1 PHD_FILE: MSMg01no327_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,973,891 - 87,974,563)(88,134,266 - 88,134,713)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCGGAA
TTCACTGAGCATAGCGGATAACAGATCATTTTATATCTGACATCAATATC
ATGCTTACTATTAAAAATTATGCATTGATAAAATCTTGGCGATGGCATTG
GATTCAGATATTTTCCTCTGCATCCTTAGCACATTTGGGGCCTAAGAGCA
CACAAAGGAGCATATTGGGCTGGTATTGCATAGCTCAGTATTTGACAATT
TGTGGCAGCTTAATTGTTTAGATTTCATTTATTCAAAGTCTGCTCATTAT
GTATAGCTGCATGCTCATTTGCATTTTCTTTTGTACAGGGGCATTTGGTT
CCCCTCCACACATGCTCATTAACCTTGATGTTCATTTATCACATTTTTCA
CGTTTAGTTCATTATTCACCTCCACCAGGCTTTCAGCAACCCAGTGTCAC
CTTGCTAATTTCTGCCCTTCAGATTTTATTTCCGATGCCCCTTCCTCCTA
GAAGCCCTACATCAACCCTGAAGATAGGTACCGTATTTTTCCAGAATGGT
CATCACTACCCTGATTTGTATTGATGTCTGACTGCCTCTGTTTGAGATTG
ATTGTCTGTCCCTCTCATTAAACTCGCTGCTTCCCTAAGATTAGGGCATT
AGTGCTTTATAAAACTTGTACTTGGGGTTCTTGCTATATACCACGTGCTG
GGTCTCCTCAGTTCCACAGATT

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGTGTTCTGTGAGCTTGTTTATAGCC
CCAGAAAGATGAAACTACTTGGAAGAAAATACTTAGTATTGTAGTCTCAA
GGAGGCTTAGAAGAGGGTAGGGGAGATATTTCCAAGTACATGCTTTCCTT
TTGGAGACCATAAAGTACCTCCCTGGTCCTCCGGTGAGGTAGTTTGGGAT
AAATCCCCATGACAAGGCACATAATACTCATAGACTCCTCCCTCTGGGTG
GGAAGAGGACACACTAGAAAGGGGAGCTGTTCCGGCCATGCCAACAAATA
TTTGATCAACTGCATGATTTGATTTTTGTCAATGGAATAAAATCTAAAAC
ACGTTGTGAGTGTCATCCACCCCTCCGCTTGACTTTCACCTGTGTCCTAT
GACATTTATGACTTTGGCTAACTTAGGGAAGATCGTACCTGGATATCTCC
CAAAGTCGAGGTCTTCCCACATGAGACCAGTTCTCCACAGTTTTGTTGTT
GCTGCTGTTTCTGTCATCTTTATTTTTTACTATTCAGCCATGACTACTAG
GAAGAGATCTCTCTTTTTCTTTAAGGTAGAAAATTCCAGTCTTTCCTTAG
CCTAATATGGTCTTTCTTAGTACTTTGATCCCCTCGTTGTCATATTGCTT
TTCCTTTATAGTTCCCGCTCTTCCCTCTTTTGTTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_n07.b1 MSMg01no327_n07.b1 CHROMAT_FILE:
MSMg01no327_n07.b1 PHD_FILE: MSMg01no327_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:48 2005
         (678 letters)



>mm_chr16_87973688_87974765
          Length = 1078

 Score = 1224 bits (633), Expect = 0.0
 Identities = 663/673 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcactgagcatagcggataacagatcattttatatctgacatcaatatcatgctta 63
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 gaattcactgagcatagaggataacagatcattttatatctggcatcaatatcatgctta 263

                                                                       
Query: 64  ctattaaaaattatgcattgataaaatcttggcgatggcattggattcagatattttcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctattaaaaattatgcattgataaaatcttggcgatggcattggattcagatattttcct 323

                                                                       
Query: 124 ctgcatccttagcacatttggggcctaagagcacacaaaggagcatattgggctggtatt 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgcatccttagcacatttggggcctaagagcacacaaaggagcatattgggctggtatt 383

                                                                       
Query: 184 gcatagctcagtatttgacaatttgtggcagcttaattgtttagatttcatttattcaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcatagctcagtatttgacaatttgtggcagcttaattgtttagatttcatttattcaaa 443

                                                                       
Query: 244 gtctgctcattatgtatagctgcatgctcatttgcattttcttttgtacaggggcatttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtctgctcattatgtatagctgcatgctcatttgcattttcttttgtacaggggcatttg 503

                                                                       
Query: 304 gttcccctccacacatgctcattaaccttgatgttcatttatcacatttttcacgtttag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttcccctccacacatgctcattaaccttgatgttcatttatcacatttttcacgtttag 563

                                                                       
Query: 364 ttcattattcacctccaccaggctttcagcaacccagtgtcaccttgctaatttctgccc 423
            ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcattattcacatttaccaggctttcagcaacccagtgtcaccttgctaatttctgccc 623

                                                                       
Query: 424 ttcagattttatttccgatgccccttcctcctagaagccctacatcaaccctgaagatag 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 ttcagattttatttccgatgccccttcctcctagaagccctacttcaaccctgaagatag 683

                                                                       
Query: 484 gtaccgtatttttccagaatggtcatcactaccctgatttgtattgatgtctgactgcct 543
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 gtactgtatttttccagaatggtcatcactaccctgatttgtattgatgtctgcctgcct 743

                                                                       
Query: 544 ctgtttgagattgattgtctgtccctctcattaaactcgctgcttccctaagattagggc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgtttgagattgattgtctgtccctctcattaaactcgctgcttccctaagattagggc 803

                                                                       
Query: 604 attagtgctttataaaacttgtacttggggttcttgctatataccacgtgctgggtctcc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attagtgctttataaaacttgtacttggggttcttgctatataccacgtgctgggtctcc 863

                        
Query: 664 tcagttccacaga 676
           |||||||||||||
Sbjct: 864 tcagttccacaga 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_n07.g1 MSMg01no327_n07.g1 CHROMAT_FILE:
MSMg01no327_n07.g1 PHD_FILE: MSMg01no327_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:48 2005
         (448 letters)



>mm_chr16_88134066_88134913
          Length = 848

 Score =  804 bits (416), Expect = 0.0
 Identities = 440/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgttctgtgagcttgtttatagccccagaaagatgaaactacttggaagaaaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 catgtgttctgtgagcttgtttatagccccagaaagatgaaactacttggaagaaaatac 589

                                                                       
Query: 61  ttagtattgtagtctcaaggaggcttagaagagggtaggggagatatttccaagtacatg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 ttagtattgtagtctcaaggaggcttagaagagggtaggggagagatttccaagtacatg 529

                                                                       
Query: 121 ctttccttttggagaccataaagtacctccctggtcctccggtgaggtagtttgggataa 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctttccttttggagaccatgaagtacctccctggtcctccggtgaggtagtttgggataa 469

                                                                       
Query: 181 atccccatgacaaggcacataatactcatagactcctccctctgggtgggaagaggacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atccccatgacaaggcacataatactcatagactcctccctctgggtgggaagaggacac 409

                                                                       
Query: 241 actagaaaggggagctgttccggccatgccaacaaatatttgatcaactgcatgatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 actagaaaggggagctgttccggccatgccaacaaatatttgatcaactgcatgatttga 349

                                                                       
Query: 301 tttttgtcaatggaataaaatctaaaacacgttgtgagtgtcatccacccctccgcttga 360
           ||||||||||||||||||||||||||||||||||||||||||||| |   ||| ||||||
Sbjct: 348 tttttgtcaatggaataaaatctaaaacacgttgtgagtgtcatctaaagctctgcttga 289

                                                                       
Query: 361 ctttcacctgtgtcctatgacatttatgactttggctaacttagggaagatcgtacctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 ctttcacctgtgtcctatgacatttatgactttggctaacttagggaagatcgtaactgg 229

                                       
Query: 421 atatctcccaaagtcgaggtcttcccac 448
           ||||||||||||||||||||||||||||
Sbjct: 228 atatctcccaaagtcgaggtcttcccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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