Query= MSMg01no329_n21.b1 MSMg01no329_n21.b1 CHROMAT_FILE:
MSMg01no329_n21.b1 PHD_FILE: MSMg01no329_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:28 2005
(480 letters)
>mm_chr16_32126819_32127698
Length = 880
Score = 884 bits (457), Expect = 0.0
Identities = 474/483 (98%), Gaps = 6/483 (1%)
Strand = Plus / Minus
Query: 1 actacatgtaggcaag------acacccataaaataaaggaagaatgaggggaaaggccc 54
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 699 actacatgtaggcaagacacccacacccataaaataaaggaagaatgaggggaaaggccc 640
Query: 55 aaatagaagtgcctggcctgaatgtgtatgcaggaagacagtgccagctgcaagggaaat 114
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaatagaactgcctggcctgaatgtgtatgcaggaagacagtgccagctgcaagggaaat 580
Query: 115 cctgcagctctgggacagtgtgggtctgcctataaactacaagctaggatgtttgcacgc 174
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 579 cctgcagctctgggacagtgtgggtctgcctataaactacaagccaggatgtttgcacgc 520
Query: 175 aaaggttaagcatcttttgaatctgtccgtgctgagtggaaaatttccagttattagatg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aaaggttaagcatcttttgaatctgtccgtgctgagtggaaaatttccagttattagatg 460
Query: 235 aagtcattccagcaaaccaaacatccttttcagaaagtagcctggtctgtctatttggct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagtcattccagcaaaccaaacatccttttcagaaagtagcctggtctgtctatttggct 400
Query: 295 tctactcatgagctaaagtccggctccagcagtctgtatgcccgaggtcttggcttggtg 354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 399 tctactcatgagctaaagtccggctccagcagtctgtatgcccaaggtcttggcttggtg 340
Query: 355 tccttcataccgcttctccacccagagatcctgtctctaagacacacttgctctccctgt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tccttcataccgcttctccacccagagatcctgtctctaagacacacttgctctccctgt 280
Query: 415 tcttgtacatcgatgttcttggttgtgttcttgtgagttcatgacaagatgatattgctt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcttgtacatcgatgttcttggttgtgttcttgtgagttcatgacaagatgatattgctt 220
Query: 475 tta 477
|||
Sbjct: 219 tta 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_n21.g1 MSMg01no329_n21.g1 CHROMAT_FILE:
MSMg01no329_n21.g1 PHD_FILE: MSMg01no329_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:28 2005
(516 letters)
>mm_chr16_31953956_31954871
Length = 916
Score = 936 bits (484), Expect = 0.0
Identities = 508/516 (98%)
Strand = Plus / Plus
Query: 1 tctatctccagcccttagctgcagtgtttaaattcttctctatttgaatttccagggcga 60
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 201 tctatctccagcccttagctgcagtgtttatcttcgtctctatttgaatttccagggcga 260
Query: 61 caatgaagaacaagaaaagttactgaagaaaagctgtacattgtatgttggaaatctttc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 caatgaagaacaagaaaagttactgaagaaaagctgtacgttgtatgttggaaatctttc 320
Query: 121 cttttatacaactgaagaacagatttatgaactcttcagcaaaagtggtgatataaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttatacaactgaagaacagatttatgaactcttcagcaaaagtggtgatataaagaa 380
Query: 181 gatcatcatgggtctggataaaatgaagaaaacagcatgtgggttctgttttgtggagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcatcatgggtctggataaaatgaagaaaacagcatgtgggttctgttttgtggagta 440
Query: 241 tccttctcaggtgtctaatctaatgtagctgttgagccaggacagaactcaagggccccg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tccttctcaggtgtctaatctaatgtagctgttgagccagggcagaactcaagggccccg 500
Query: 301 agtacctgcctttttgttttgggacagggtctcactgcatggccctggctagcctgaact 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacctgcctttttgttttgagacagggtctcactgcatggccctggctagcctgaact 560
Query: 361 ccagccacctacctgtccctgcctcccggtgttaggactgaaggtgtaaagtgtatgcca 420
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ctagccacctacctgtccctgcctcctggtgttaggactgaaggtgtaaagtgtatgcca 620
Query: 421 ctacacccccacttgttttgttaaggtattaacttgttacaatctcactccttcctatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacacccccacttgttttgttaaggtattaacttgttacaatctcactccttcctatga 680
Query: 481 gtcctgtgcctttaatccctttaatcctaccgctta 516
||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcctgtgcctttaatccctttaatcctaccgctta 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
