BAC Information

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BAC

Clone NameMSMg01-330A18
Chromosome16 (Build37)
Map Location 62,440,117 - 62,440,450
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A18.T7 (MSMg01no330_a18.b1)MSMg01-330A18.TJ (MSMg01no330_a18.g1)
ACCAG446707AG446708
length715717
length of high quality
(start - end)
333 (383 - 715)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no330_a18.b1 PHD_FILE: MSMg01no330_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005CHROMAT_FILE: MSMg01no330_a18.g1 PHD_FILE: MSMg01no330_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAGAGAACATTGCTCTTAGGCTTAGCTGGAAACTTTAATCAC
CTTCAAGATTTTTAGACAGACTCACAGATCCTGATACCTGAGGGGTACTG
GATATGTTTTCTTCTTGAATTATTCAGTAACTATGCCAACACCAATCTGT
AGATATTTTTCAAAACTCAGGAACTGCCTGCTTTAATCATCTAATATTAA
AGTGTGATGGAAACATCATGATAATTTGTCAAAAATACTTCATGCAAATC
TAAAGCCTGAATGAATTACAAAATGTTTTTAAACAAGTGATTACCATTTA
ACATCCTCCTTTTTTTTCCACCCCTCCACCATTATTGTGAAACCTTCCCT
GCTCATCCTAACCATTGTCGGCCCTACCACACTCCAACATGCAACTTCGA
GTACTCATCATTTTCCAAGTTCTAGCTGACTCTCCTATTCAAAGTTTCCT
TGTCCGTACCCTATTCCCCATGTCTTTTCCTGGGTAGTAGGGAGGGTAGA
GAATTATTCAGCTATAATTAAATCAACTATACCTAAATCTAGTGTTTCCT
ATGTTGATTTATTAGGCTCTCATCCAAATGCAAAGTCTAACTGCTCAACG
GTTGAATAGATCTGTGATTGTGCCATTCTACCATGTTCCAAGAGCTTGCT
CCGATCTAGTTGATC
CCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGATCCTCCGACTTCTAGGC
ATCTTTTAGGCAGAGACACACTTCGCACTTTCTCTAACCTTCTTTGGTTA
GGATATGCGTCCTTAAGTCTAGTGGCTCCATTGTCAGGAGCCCTTGTTGC
TCTCCCAGAGGACCCAGGTTGGGGTCCCAGCACCTACATTTGCACTCATC
TCTGGCCTCCATCCTAGCAGATCCACTCCCTTTTCTGGCTACTGCAGATA
TGAGGGACATAGGCAATACACAGATGTACACACAGAAACAGTTACACTTT
TTCGTTTTTCTTTTCTTTTTACCCCCACTCCACTTTCTTGCCAATGGCAG
GTCCATGGCAGGTTTAGTCTGTGGAAGGAGAAGGCTGTGTTCAGGACTCA
TGGGGAAGTCAACAGTGCATGTAATGTTCTGAGTTCTGACCAGGTTAGAA
GGTACATGGGTGTTTGCTCTGTTTCTAGTCATCAGATTCTGCAGATGTGT
TTCACATACTCCTCAGTGTGGTGTTTCACAAGAATGGTTACACATTACTT
TAAAAACAATTCTTTGATATGTTATGTTTGAATAGCATAACATAATATAC
ATGTGCACTATAAAGAATCCAACGAGAGTAGGGAAAGAGACTTTCTAGTA
AAAATTAACTACGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a18.b1 MSMg01no330_a18.b1 CHROMAT_FILE:
MSMg01no330_a18.b1 PHD_FILE: MSMg01no330_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:42 2005
         (333 letters)



>mm_chr16_62439917_62440650
          Length = 734

 Score =  592 bits (306), Expect = e-173
 Identities = 327/334 (97%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgtgaaaccttccc-tgctcatcctaaccattgtcggccctaccacactccaacatg 59
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 201 tattgtgaaaccttcccctgctcatcctaaccattgtcggccctaccccactccaacgtg 260

                                                                       
Query: 60  caacttcgagtactcatcattttccaagttctagctgactctcctattcaaagtttcctt 119
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacttcaagtacccatcattttccaagttctagctgactctcctattcaaagtttcctt 320

                                                                       
Query: 120 gtccgtaccctattccccatgtcttttcctgggtagtagggagggtagagaattattcag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccgtaccctattccccatgtcttttcctgggtagtagggagggtagagaattattcag 380

                                                                       
Query: 180 ctataattaaatcaactatacctaaatctagtgtttcctatgttgatttattaggctctc 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctataactaaatcaactatacctaaatctagtgtttcctatgttgatttattaggctctc 440

                                                                       
Query: 240 atccaaatgcaaagtctaactgctcaacggttgaatagatctgtgattgtgccattctac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaaatgcaaagtctaactgctcaacggttgaatagatctgtgattgtgccattctac 500

                                             
Query: 300 catgttccaagagcttgctccgatctagttgatc 333
           ||||||||||||||||||||| ||||||||||||
Sbjct: 501 catgttccaagagcttgctccaatctagttgatc 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)