Query= MSMg01no331_c06.b1 MSMg01no331_c06.b1 CHROMAT_FILE:
MSMg01no331_c06.b1 PHD_FILE: MSMg01no331_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:00 2005
(618 letters)
>mm_chr16_44566491_44567508
Length = 1018
Score = 1170 bits (605), Expect = 0.0
Identities = 611/613 (99%)
Strand = Plus / Minus
Query: 4 ggaattctttcaacattccagcccacacaggtgcactaggcttcaacagctatgacagga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ggaattctttcaacattccagcccacacaggtgcactaggcttcaacagctatgacagga 757
Query: 64 aacgtggttttattcagtcttcattccttcatccatttgacttgctatatattgctcaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aacgtggttttattcagtcttcattccttcatccatttgacttgctatatattgctcaga 697
Query: 124 tgttgtgttgaacattagaggcacaaatatgaaaaagtagggattgattttgggcttaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgttgtgttgaacattagaggcacaaatatgaaaaagtagggattgattttgggcttaaa 637
Query: 184 gatattctagtctggaaaatagacaggtagaacccctccctcactgacttttactattac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gatattctagtctggaaaatagacaggtagaacccctccctcactgacttttactattac 577
Query: 244 aatgctcataacagattcaagacaaagtcaaggagagttccctggacagtaggaggctgg 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 576 aatgctcataacagattcaagacaaaggcaaggagagttccctggacagtaggaggctgg 517
Query: 304 gatgggggcagttgggaatagaggcttcccagaggaggcaacgctgcagaaacgtcttga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gatgggggcagttgggaatagaggcttcccagaggaggcaacgctgcagaaacgtcttga 457
Query: 364 aggtaagttagatggtagagaagaggagaaacagtttaagtctagagaggaagtgagcca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggtaagttagatggtagagaagaggagaaacagtttaagtctagagaggaagtgagcca 397
Query: 424 tctaggaaggaaagacagtgtggttggtgctttgaggacacaatgggaggacaagataca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctaggaaggaaagacagtgtggttggtgctttgaggacacaatgggaggacaagataca 337
Query: 484 atgggtggaccactcggggaatcagcttggagagttgatggagctgaatcagataggtgc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 336 atgggtggaccactcggggaatcagcttggagagttgatggagctgaatcagatgggtgc 277
Query: 544 ttggcccctgtctcagaaaacctgggagaaaagaacatgcctgagtccattgttttttgg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttggcccctgtctcagaaaacctgggagaaaagaacatgcctgagtccattgttttttgg 217
Query: 604 ttttgtttgtttg 616
|||||||||||||
Sbjct: 216 ttttgtttgtttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_c06.g1 MSMg01no331_c06.g1 CHROMAT_FILE:
MSMg01no331_c06.g1 PHD_FILE: MSMg01no331_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:00 2005
(647 letters)
>mm_chr16_44419474_44420520
Length = 1047
Score = 1062 bits (549), Expect = 0.0
Identities = 600/647 (92%), Gaps = 46/647 (7%)
Strand = Plus / Plus
Query: 1 cttatagccattagtttataatatacatgtgtttataatatacatgtgttcttaaggagg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttataaccattagtttataatatacatgtgtttataatatacatgtgttcttaaggagg 260
Query: 61 gctgccataggtaaggttcataaagttcagtgggagagctcttgcctagcatgtagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgccataggtaaggttcataaagttcagtgggagagctcttgcctagcatgtagacag 320
Query: 121 ctccgctttgatctctggcaccctctaaatgcaaaccaaaacaaaagcctgcctcagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccgctttgatctctggcaccctctaaatgcaaaccaaaacaaaagcctgcctcagata 380
Query: 181 aaggaaataactctatattctataggaagtaagaggtgaacagatgtattgtggaattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaaataactctatattctataggaagtaagaggtgaacagatgtattgtggaattat 440
Query: 241 tttagaaattatatatacagaaatacgtatgtatagacacatttatggtagtcacatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagaaattatatatacagaaatacgtatgtatagacacatttatggtagtcacatttc 500
Query: 301 tagactatgaacagaaatggttgggaagatgaatcaaacatttgaaaccatatatatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagactatgaacagaaatggttgggaagatgaatcaaacatttgaaaccatatatatata 560
Query: 361 tatatatacatatatatatacatatatatatatatacatatatatatacatatatatata 420
|||||||| ||||||
Sbjct: 561 tatatata----------------------------------------------tatata 574
Query: 421 tatatgcacacatatatttcagattaatctacaatacgtgactgttgagtctataaatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tatatgcacacatatatttcagattaatctacaatacgtgactgttgagtctataaatat 634
Query: 481 aaattagataggctctatggtattaaacagaatgctgtatgaccttattgtcatagtaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaattagataggctctatggtattaaacagaatgctgtatgaccttattgtcatagtaat 694
Query: 541 atgtattgggtgggcgtgtccctttttcttctagagtgaagacaagactgtcttcttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atgtattgggtgggcgtgtccctttttcttctagagtgaagacaagactgtcttcttttt 754
Query: 601 tgatgtggagaaagaatacaagccgattggtttttttaacactcctg 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgatgtggagaaagaatacaagccgattggtttttttaacactcctg 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
