Query= MSMg01no332_g06.b1 MSMg01no332_g06.b1 CHROMAT_FILE:
MSMg01no332_g06.b1 PHD_FILE: MSMg01no332_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:47 2005
(533 letters)
>mm_chr16_73564961_73565893
Length = 933
Score = 646 bits (334), Expect = 0.0
Identities = 352/358 (98%)
Strand = Plus / Plus
Query: 174 tgtgaacaggagagcaaaatgctagaaagaatttaatttcctgacgtcatgaagcttctg 233
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 tgtgaacaggagagcaaaatgctagaaagaatttaatttcctgacatcatgaagcttctt 433
Query: 234 agtctagactcctgatatctaccgcccacttaacttcctgctacggaacacaaggacttt 293
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 agtctagactcctgatatctaccgcccacttaacttcctgctatggaacacaaggacttt 493
Query: 294 tataagcaacattttgagctgaagtctcacctagttacagttgaaaacatcctgactgat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tataagcaacattttgagctgaagtctcacctagttacagttgaaaacatcctgactgat 553
Query: 354 aacaacagttactagctaagtatcaccacagtaggaattattacaggttcttgcctggga 413
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 554 aacaacagttactagctaagtatcaccacagtaggaattattacgggtccttgcctggga 613
Query: 414 gcctttatctagtgctctatggattttctggagtacatggatatttctagcataaagaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gcctttatctagtgctctatggattttctggagtacatggatatttctagcataaagaaa 673
Query: 474 aaaattaattttcttttcaatcatatttggctttgctctaggaacagaatgcttttgc 531
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aaaattaatttccttttcaatcatatttggctttgctctaggaacagaatgcttttgc 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_g06.g1 MSMg01no332_g06.g1 CHROMAT_FILE:
MSMg01no332_g06.g1 PHD_FILE: MSMg01no332_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:47 2005
(643 letters)
>mm_chr16_73742349_73743391
Length = 1043
Score = 1094 bits (566), Expect = 0.0
Identities = 614/642 (95%), Gaps = 22/642 (3%)
Strand = Plus / Minus
Query: 4 tgtgaatataatcaaatgtaaattcttttatatcatataataaggaagactttaaatttg 63
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 952 tgtgaatataatcaaatgtaaatttttttatatcatataataaggaagactttaaatttg 893
Query: 64 gccatgttggacgagggaaactgaaattttcctactctcctctattaaatgcaaaaaaa- 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gccatgttggacgagggaaactgaaattttcctactctcctctattaaatgcaaaaaaag 833
Query: 123 aaaa-----aacaacaacaaaaaaacaaaaactagaaaacaacaacaacaacaacaaaag 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aaaaccaacaacaacaacaaaaaaacaaaaactagaaaacaacaacaacaacaacaaaag 773
Query: 178 agatgggttgcaatagagaaaaaggcaattcttgggaagaactctgataactgtaaattt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agatgggttgcaatagagaaaaaggcaattcttgggaagaactctgataactgtaaattt 713
Query: 238 taaaagaattgaaaagaaagcctcagctgttcaaagccggctattagtaaatgctaaaag 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 712 taaaagaattgaaaagaaagcctcagctgttcaaagccggctattagtaagtgctaaaag 653
Query: 298 gaactttaaggatgtaatgttcatatggttgaaaaaaaatcatgataaaatataactgtt 357
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 652 gaactttaaggatgtaatgttcatatggctgaaacaaaatcatgataaaatataactgtt 593
Query: 358 atttgcctggccattgtcctaaaaggcaaatatgcatatgttattccaattgtaaaattt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atttgcctggccattgtcctaaaaggcaaatatgcatatgttattccaattgtaaaattt 533
Query: 418 taagatagctatatttagtaaaaatgttacagtagtatatttataccatgacttggattt 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 532 taagatagctatatttagtaaaaatgttagagtagtatatttataccatgacttggattt 473
Query: 478 agttatgcatattcattatccaatatttagatcaaagcatgtttgacttcgtgtatttta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agttatgcatattcattatccaatatttagatcaaagcatgtttgacttcgtgtatttta 413
Query: 538 tatagatatgttgagaaagggtgttgatccaagaggtaatatatatatatatgt-tagtg 596
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 412 tatagatatgttgagaaagggtgttgatccaagaggtaacatatatatatatgtata--- 356
Query: 597 tgtgtgtgtgtgtatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 355 ------------tatatatatatatatatatatatatatata 326
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatataca 640
||||||||||||||||||||||||||||||||
Sbjct: 330 tatatatatatatatatatatatatatataca 361
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 314 tatatatatatatatatatatatatatata 343
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 316 tatatatatatatatatatatatatatata 345
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 318 tatatatatatatatatatatatatatata 347
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 320 tatatatatatatatatatatatatatata 349
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 322 tatatatatatatatatatatatatatata 351
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 324 tatatatatatatatatatatatatatata 353
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 326 tatatatatatatatatatatatatatata 355
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 609 tatatatatatatatatatatatatatata 638
||||||||||||||||||||||||||||||
Sbjct: 328 tatatatatatatatatatatatatatata 357
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 610 atatatatatatatatatatatatatata 638
|||||||||||||||||||||||||||||
Sbjct: 313 atatatatatatatatatatatatatata 341
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 607 tgtatatatatatatatatatatatata 634
||||||||||||||||||||||||||||
Sbjct: 277 tgtatatatatatatatatatatatata 304
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 613 tatatatatatatatatatatatataca 640
||||||||||||||||||||||||||||
Sbjct: 279 tatatatatatatatatatatatataca 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 13
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
