BAC Information

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BAC

Clone NameMSMg01-332M03
Chromosome16 (Build37)
Map Location 67,516,227 - 67,621,383
singlet/doubletdoublet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332M03.T7 (MSMg01no332_m03.b1)MSMg01-332M03.TJ (MSMg01no332_m03.g1)
ACCAG448703AG448704
length1,2341,270
length of high quality
(start - end)
548 (130 - 677)274 (136 - 409)
definitionCHROMAT_FILE: MSMg01no332_m03.b1 PHD_FILE: MSMg01no332_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:33 2005CHROMAT_FILE: MSMg01no332_m03.g1 PHD_FILE: MSMg01no332_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,516,227 - 67,516,774)(67,621,110 - 67,621,383)
sequence
NNNCCCCGTATCATTTNNNNTCATTGGCGCTAAGACTACTAAGGGAGAGG
ATCCGCGGAATAAATGATCTCAAACTACCTCCTAATGAGTCCTCACCCTG
AAAACTTCCACTTATAAAACTCCTCATATCATTTGAGAAACAGCTCTAAT
TTCTATATGGAGTTTCCTTGTAAACTTTTCAAAAGAATCATTTCCCCAAT
ATTATTAAGTTACTGAAACACTTCCCTTTTCCCGGATAACATTCTGATGT
TTGAAGACTACAGTCTCATTCCTCATCAGTTTTAGCTTTCCCTAACTCAA
TCACAGTTAATTTTTCTGATCCAGTTTCTTCAGTGAAAGTGTTTTACAGT
TCATTGAAATGATTTTTAAAGTATTCAGATAGCAGAAGGGCGTCAGACAG
AGCAAAGCAGAGATCAGTCTTATTCAGTTTCATAAAAAGATAATACATTT
CTAGTCATCTTAGGTCACTATTTTGTTGTTAAGGTCTTATGATGAAGTTT
ACTGTTGTCATCTAATAATCTCACATTTTAAGTACAGCTCTAAAAATGTA
GCTGGAGTTAAATGCAGAAAATAAGTTCTCCCCTAGGTTGACAAATAATT
GTTATACATAGCTATGGTTAACTGGTTATGCTATTTCACTAGAAACCCCT
TCATACTGGTGGTTATCTTTGGGTGCCAGTCTTTTCATACTAAGGAAAAG
GTTGTTATTATTATTATTATTCAGAACCAAAGGAGCTATTCTAAGTTGTG
CCAAGGACGCTTACTGTGGCTATTTATTGAAATTAGAACAAACAAGAAAA
ATTGTCACCGCTTTTAATACAGAACTAATTCATTTTTTATGTCTGAAAAA
ATAATTAAATGGTTTCAGTAATATAAAAGACATGGCTGCGTATACTTAAC
GAAAACATTTTGCAATCTAAACTAATTGAATACATGGTTAAAAGAGGAAA
GGCTTTTAATTACACCTTTGCGAATAAAAATTCAGAAAAAGATGGAAAAC
CCTATTGTTTATTTCAGGCGAAAGGGCTTACTTTAAAAAAAAAATACAGT
GGTTCAGGTAAAATTGATTTCCATTGAAAAAAGAACAAACGGAAAGGTCT
AAAAATAGTAATCCCTAGTGAACCCTGAAACGAGGGGAAAATTTAAGAAA
AAACTGAAGGTAAAAAAACCTCCGAAAAATGGAAATCGGTAATTCTCAAA
TTTAAACCCGTAGTAAACAAATTTAAAAAAGTAA
CCCGCCCTCTTNNNNAATCATGTGAGNCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTGAAGCAGGGCTCAGCACC
TGTTCCTGAACAGGGCTGCCTTCCATGCAAGTTACCACGTGGCCACCTTT
AAGGAGGTGACACCAGTCCTGAGTGCGTGAAAGGGGGCTTCAGAGCTTCC
TGCCCGAAGGGTCCTTGAGAAGCCTGTTTGTTTTTCCCGGCGCTTGTCTC
CTCCCACCCTTCTCTGTCATTGGCCCGGTGTGGTGGGTGGGTGTGTTCCT
ATTGGTCAGGGGGTGGAGCCTATCCCTGGCCAGGGTAGGGGCGGGGCCTT
CGCGGCGCTGAGCTTGCCCTTGTGTCTGGTGCTCGCTAGAGCTGCTGCTG
CCGCCGCTGTTTTTGCCGCCGCCTCCGTCGCCGCCGCCGCCGCCGCCGCC
GCCGCCACTGCTGCTGCTGCAGCCGGAGCATCCGGGAGCCGCCGCCGCCG
CTGCTGCCACCGCTACCAAGCGCTGCTACCACTGCTGCCCACCTCTTCTC
CCAGGACTCTGACACCCGAGCGCGAGCGGCGGTGCTGCCAGCTTGCTGCC
CCTGTCCCCCACCCCTCCCTTCCGTGACCTACCCACTCCTTGCAGCCCTC
GCCTGCACCTTCCCCGACACCCCGGCATCTCCGCATCACCTGCCTGAACA
ACCTCCGGTTGATCTCTGGTACTTGCCTCGAGCTCCCAAAGGAAGGCAAG
GTCCTAACCGGTGCCCGTCAAATCAGTTTTCTCTCTTGTATTTTTACTAC
CTAACGTACTACAATCTATTTATCCTCACGAAATCCTTTTCTGTTTGTGA
TTTGCCCCTGCCGTTTTTGTGTTCCGTTATTCTCCTTCCCCTCGGTCTCA
TATAAGACTCGTCTCTTTCTTTTTTTTTTCTTCTTTTCTATCTCACTATA
CTTTATTCTACCTTTAAATGCATACTTTTTTTATTCTTCTCTTCTTATTC
TCTTTCTCTCTCTTATTGACTCCTTTCCATATCTCATATCTCTCCTTTAT
CTTATCTTTTATTCATATACTCCCCTTTCCTATTTTTCCTATCCCTCTTT
TTCCATTTACCATACTACTTACTTTCTACCTAATTCTAATTTCTTTATCT
TATCCTTCCTCTTCTTCCTTCCCCTCTGTTCTTTTGTTATTCTTTCTACA
TTTCATCGCTTCCTTTACCTCCCTTCTTTATCTAGATCATAATACCCTAT
CATCTATATACTATTTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_m03.b1 MSMg01no332_m03.b1 CHROMAT_FILE:
MSMg01no332_m03.b1 PHD_FILE: MSMg01no332_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:33 2005
         (548 letters)



>mm_chr16_67516027_67516974
          Length = 948

 Score = 1044 bits (540), Expect = 0.0
 Identities = 546/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgagaaacagctctaatttctatatggagtttccttgtaaacttttcaaaagaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgagaaacagctctaatttctatatggagtttccttgtaaacttttcaaaagaatc 260

                                                                       
Query: 61  atttccccaatattattaagttactgaaacacttcccttttcccggataacattctgatg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttccccaatattattatgttactgaaacacttcccttttcccggataacattctgatg 320

                                                                       
Query: 121 tttgaagactacagtctcattcctcatcagttttagctttccctaactcaatcacagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaagactacagtctcattcctcatcagttttagctttccctaactcaatcacagtta 380

                                                                       
Query: 181 atttttctgatccagtttcttcagtgaaagtgttttacagttcattgaaatgatttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttctgatccagtttcttcagtgaaagtgttttacagttcattgaaatgatttttaa 440

                                                                       
Query: 241 agtattcagatagcagaagggcgtcagacagagcaaagcagagatcagtcttattcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtattcagatagcagaagggcgtcagacagagcaaagcagagatcagtcttattcagtt 500

                                                                       
Query: 301 tcataaaaagataatacatttctagtcatcttaggtcactattttgttgttaaggtctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcataaaaagataatacatttctagtcatcttaggtcactattttgttgttaaggtctta 560

                                                                       
Query: 361 tgatgaagtttactgttgtcatctaataatctcacattttaagtacagctctaaaaatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgaagtttactgttgtcatctaataatctcacattttaagtacagctctaaaaatgt 620

                                                                       
Query: 421 agctggagttaaatgcagaaaataagttctcccctaggttgacaaataattgttatacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctggagttaaatgcagaaaataagttctcccctaggttgacaaataattgttatacat 680

                                                                       
Query: 481 agctatggttaactggttatgctatttcactagaaaccccttcatactggtggttatctt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 agctatggttaactggttatgctatttcactagaaaccccttcatactggtgtttatctt 740

                   
Query: 541 tgggtgcc 548
           ||||||||
Sbjct: 741 tgggtgcc 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no332_m03.g1 MSMg01no332_m03.g1 CHROMAT_FILE:
MSMg01no332_m03.g1 PHD_FILE: MSMg01no332_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:33 2005
         (274 letters)



>mm_chr16_67620910_67621583
          Length = 674

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgtggccacctttaaggaggtgacaccagtcctgagtgcgtgaaagggggcttcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cacgtggccacctttaaggaggtgacaccagtcctgagtgcgtgaaagggggcttcagag 415

                                                                       
Query: 61  cttcctgcccgaagggtccttgagaagcctgtttgtttttcccggcgcttgtctcctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttcctgcccgaagggtccttgagaagcctgtttgtttttcccggcgcttgtctcctccc 355

                                                                       
Query: 121 acccttctctgtcattggcccggtgtggtgggtgggtgtgttcctattggtcagggggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acccttctctgtcattggcccggtgtggtgggtgggtgtgttcctattggtcagggggtg 295

                                                                       
Query: 181 gagcctatccctggccagggtaggggcggggccttcgcggcgctgagcttgcccttgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagcctatccctggccagggtaggggcggggccttcgcggcgctgagcttgcccttgtgt 235

                                             
Query: 241 ctggtgctcgctagagctgctgctgccgccgctg 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ctggtgctcgctagagctgctgctgccgccgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)