BAC Information

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BAC

Clone NameMSMg01-332P02
Chromosome16 (Build37)
Map Location 34,300,308 - 34,300,848
singlet/doubletsinglet
Overlap geneKalrn
Upstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332P02.T7 (MSMg01no332_p02.b1)MSMg01-332P02.TJ (MSMg01no332_p02.g1)
ACCAG448835AG448836
length1,2321,292
length of high quality
(start - end)
---569 (133 - 701)
definitionCHROMAT_FILE: MSMg01no332_p02.b1 PHD_FILE: MSMg01no332_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:56 2005CHROMAT_FILE: MSMg01no332_p02.g1 PHD_FILE: MSMg01no332_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAACCTCCNNNNTCACTCTCGGCCTAATACTCCTATGGGAGAGGATCC
GCGGAATTCTCATTAGGAAACATCCTTTACGCCCCCAGNAAGNNGNGNGG
NCNGAGNGNAACCTTTTAAAGTCTCATCCAGGATTCCGGGNTCTTGACTG
TATGCCCGTCCAGTACACTGTGCACCAAGGTGGTGGTTGTTGTTGTTGCT
GCTGCTGCTTTTGTTCCTCTTCCTTCCCCCGCCTCCTCACCATTCTCCTC
ATCTTCTTCTCCTCCTTTTTCTCCTATTCCTTCTCCCCCTTTCCTCTTCC
TCTTCTTCCTTCTCTTCCTCCTCCTCTTCTTCTTCCTTCTTCCTGCATGT
CCCCTTATGACTTATCCTGAGTCAACCACCTGCCCACCCAGATCTCAAAA
TACTTTTGGACAAACTAGCCTGAGATAGTTATAACCAATCTGGCAGCGTC
GTAAATGACTAACACTCTTTCTTCCGTCTGTAGCCCAGCCCCATGTTAAC
CTTAATCCTCACTGCTCAACCAAGCCTTTCTGCAGGCGCTTCTTTCTGGG
CTACTGTGTCTACTTGTCTCAGATCATCCGGCCACGTACGTGCGACCCCT
AGGCCTGGACTTCTGGATCTCCTCACACGCCCAACTTGTTTGGCTTTTGC
CTCTCCAAATATGTTCTCTACTGAGCTTCTGGATGACGCCTGCGCTATGT
CCTGGACATTTCTTCCCCTGTACTCTAAGATGGTCAAAATTCCTACTTGA
GATAGTTCTCCATCCCTCTTTGCTCCTGGAACTCTCCGGTCCCTATATCA
TATGTCTTACATTCTTTGCTGCACATCCTGAACTACTTCTGGAACTTCCT
CAGATTGTAAATTTTAAAGACATTTTAGGCGATTTGCGCATGTATGCATA
CTAAAAAATTATTTTCTGGCTTAACTATTGAAGTATTTTAAAGCGAGATT
TTGGTTTGGTTTAACAACGGGCCCCTCCCCTTAACCCTAAATTTTGGTTG
TCCTGGAAACTCCCTATGTATACCCACCCCCCAACTCCCTAAAATCCACT
TGTTTTCGTCTTCCTAAAAACTGGGATTAAAAGTGTGTCCCCCTTCTTTC
CCAGTTTTTAAAAAATTTTAAAAACTTTCTACATCTCCCCCCTCTCATGG
AGAAGGGTTTTCAATTGATGCATATTCCAAACCTCCACGGGGCGTTCTCC
CTTCAAAAAAAACCTAACTATCTGCTGTTCTG
CCGCCCCTNTNNAAACACATGCGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCCCCCCCGAAATCC
CAGCCAGAGTACCAGGAGCCTTAACTGACCGTGCCAAGGGAAGGAGGGAA
GGAGGGCAGAATAGCTCTCTGACTGGAGGGAAGATAGGAACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACCTGTC
TCTATGTGCTTTCACTTTATTGGGCATGCTCCACCCTTCTCCCCTAGGAA
GAGGGAGGCAATGGGTGCCACTTCTCTCTGCATTTTCTTGGATGCCGCAG
GTCAGAGGCTAGTTGCTTCCATGTTCATATCCTTCTTCCTGGGATTTTCG
TGTTCCTCTTGTACCTTCTTCCTCTGGATCCCATTTCCATCCTACATCCA
CCTGCCCTCTACACCCTCTTTCTGTGTGCCTTGCTTCTTGTTCCCACCAC
AACTATCTCCCATGGTGTTGCTGTGTGTGCATGTGTGTTTGAGTGTGTGT
ATGTGTATGCACACATGTGTATGTTTTTAAGTGTATGTGTATGCATGCAA
GGGCGTGAGTTTGTGTTTTTGAATGTGTGTGCATGCTTGTGTGTGTGAGT
GTGTGTGAGAGTGTGTGCGTGAGTGTATGTGTGTGCGAATGTGTGTGTAT
ATGTGCGCGTGTGCCCCCCCCCCCCTCCCACTTCCCAACTCTCCCCCCCT
CCTTCTCCCCCTCCTCCTCCCTCCTCCCCTCCCTCTTCTCTCTCTTCTCT
CCCTCCCCCTCTTCCCTCCCCTCCTTTCCACCCACCCCTCCCTCCTCCTT
CTCTCCCCTCTCCCCTCCCTCTCCCCCTTCCCCCCCCTCACCTCCCCATC
CCCTCATCCTCTACTCCCTCCCCCCTCTCCTCATCCCCCACCCCACATCT
CTCTTTCCTCCTCCCTCCTCCCCCTCCACCCATCTCCCCACCCCCTTCAA
CCCCCTCCCTCACACATCTCCCTTCTCTTCCTCCTCTCCCCTTCTCCCCT
CTCTCTCTCTCCCTCCCCCTCCTACTCCCCCTCTTTACCACTCCCCTTCC
ACCTTCCTCCTCACCTCCCTCCTCTCTCTCTCTTACCCATCTCCCTTTCT
ACTCTCTCCTCTCTCTCCCTCCTCACTCTCTTTACCTCCCTATCTTCCTC
CCCCTCCCTCCATCATCCTTCCCACCTCCTCTTCCTCTCCCTCTCCTCTA
TAATCTATCCCTCCACTGCATGTCATCACCTCTCTCCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_p02.g1 MSMg01no332_p02.g1 CHROMAT_FILE:
MSMg01no332_p02.g1 PHD_FILE: MSMg01no332_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:56 2005
         (569 letters)



>mm_chr16_34300175_34301143
          Length = 969

 Score =  888 bits (459), Expect = 0.0
 Identities = 528/569 (92%), Gaps = 28/569 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaagggaaggagggaaggagggcagaatagctctctgactggagggaagataggaaca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
Sbjct: 674 gccaagggaaggagggaaggagggcagaatagctctctgattggagggaagatagg---- 619

                                                                       
Query: 61  cacacacacacacacacacacacacacacacacacacacacacacacacacacctgtctc 120
                                    |||||||||||||||||||||||||||||||||||
Sbjct: 618 ------------------------gacacacacacacacacacacacacacacctgtctc 583

                                                                       
Query: 121 tatgtgctttcactttattgggcatgctccacccttctcccctaggaagagggaggcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tatgtgctttcactttattgggcatgctccacccttctcccctaggaagagggaggcaat 523

                                                                       
Query: 181 gggtgccacttctctctgcattttcttggatgccgcaggtcagaggctagttgcttccat 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gggtgccgcttctctctgcattttcttggatgccgcaggtcagaggctagttgcttccat 463

                                                                       
Query: 241 gttcatatccttcttcctgggattttcgtgttcctcttgtaccttcttcctctggatccc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gttcatatacttcttcctgggattttcgtgttcctcttgtaccttcttcctctggatccc 403

                                                                       
Query: 301 atttccatcctacatccacctgccctctacaccctctttctgtgtgccttgcttcttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atttccatcctacatccacctgccctctacaccctctttctgtgtgccttgcttcttgtt 343

                                                                       
Query: 361 cccaccacaactatctcccatggtgttgctgtgtgtgcatgtgtgtttgagtgtgtgtat 420
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cccatcgcaactatctcccatggtgttgctgtgtgtgcatgtgtgtttgagtgtgtgtat 283

                                                                       
Query: 421 gtgtatgcacacatgtgtatgtttttaagtgtatgtgtatgcatgcaagggcgtgagttt 480
           |||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||
Sbjct: 282 gtgtatgcacacatgtgtatgtttttgagtgtatgtgcatgcatgcaagggtgcgagttt 223

                                                                       
Query: 481 gtgtttttgaatgtgtgtgcatgcttgtgtgtgtgagtgtgtgtgagagtgtgtgcgtga 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 222 gtgtttttgaatgtgtgtgcatgcttgtgtgtgtgagtgtgtgtgatagtgtgtgtgtga 163

                                        
Query: 541 gtgtatgtgtgtgcgaatgtgtgtgtata 569
           ||||||||||||| |||||||||||||||
Sbjct: 162 gtgtatgtgtgtgtgaatgtgtgtgtata 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)