TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGCCTCTTTCTAGAACTATATGCCACATAGCAGAACACAAGAAT
ATTTACAATGGTATAATAGTTTTGCAAGCAAAGACATAACAAAAGTTGCA
AGCAAAAATCCCACCCATGCTAGAGACAATAAAAAAATGACATTAAATGA
AAATATCTATCTTTTCTGAAATTTGTCTCACTCTAAATTGTTGTAGGACA
CACTGTTTCGATGCCTAGCTGCTGTTAATTAGATCAGCACAGGCGCTGGA
GCTTTGGTTTTCCTTTTGAGTGTTGCCACCAGCTGCAAAACATCCATTTC
CTCATAATTGATTCTCAAGTTTATTTGCAATGTTCCATGAGGCATAGCCT
ACTGAAATGACTCATCATGTTTATGGGAACAACATAAGAATAAAGGTTAT
GTTTGAATGGTTTTGCCATATTAAATTTAGACTAAAAACATGGTTTCTTG
GAAGTTATTTTAAGCCAGCTTTTAAATATACAAATTTAATTAGATTTCAA
TTTGAAAATCACTTTCCTTTATGAGAAGTAGTCAGTTCCAAAACTGTTAA
AAGGAGGGCCTACTTAAGGTATGAGTCTATGCTAGTTTAGAATTTACATA
CAAAGAAATACATTGTTTTAATGCAAATTAACTTATTTTTATGGCCAGGT
TATATTAAAATTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTCTA
AATAGGATCATTTGGTTTTCTGGAGTCTAACTTCTTGAGTTCTTTATATA
TATTGGATATTAGCCCTCTATCAGATTTAGGATTGGTAAAGATATTTTCC
CAATCTGTTGGTTGCCTTTTTGTCTTATTGACAGTATCCTTCGCCTTACA
GAAGCTTTACAATTTTATGAGGTCCCATTTGTCTATTCTTGATCTTACAG
CACAAGCCATTGGTGTTCTGTTCAGGAATTTTTTCTCCTGTGCCAATATC
TTCGAGGCTTTTCCTCACTTTCTCCTGTATACGTTTCAGTGTCTCTGATT
TTATGTGGAGTCCTTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGTT
AAGAATGGAAAAATTCGCATTCTTCTACATGCTAACTGTCAGTTGAAACA
TTACCATTTGTTACAAATGCTGTCTTTTTTCCACTGGATGGTTTTAACTC
CTTTGTCAAAGATCAAGTGACCATAGATGTGTGGGTTCATGTCTGGGTCT
TCAGCTCTATTCCATTGATCTACCTGTCTGTCATTGTACCAGTACCATAC
AGTTTTCATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGGTAA
TTCCGC

Query= MSMg01no333_a01.b1 MSMg01no333_a01.b1 CHROMAT_FILE:
MSMg01no333_a01.b1 PHD_FILE: MSMg01no333_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:04 2005
         (664 letters)



>mm_chr16_66709015_66710081
          Length = 1067

 Score = 1071 bits (554), Expect = 0.0
 Identities = 570/576 (98%), Gaps = 3/576 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgcctctttctagaactatatgccacatagcagaacacaagaatatttacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 780 gaattccttgcctctttctagaactatatgccacatagcagaacacaggaatatttacaa 721

                                                                       
Query: 65  tggtataatagttttgcaagcaaagacataacaaaagttgcaagcaaaaatcccacccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tggtataatagttttgcaagcaaagacataacaaaagttgcaagcaaaaatcccacccat 661

                                                                       
Query: 125 gctagagacaataaaa--aaatgacatt-aaatgaaaatatctatcttttctgaaatttg 181
           ||||||||||||||||  |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 660 gctagagacaataaaaataaatgacattaaaaagaaaatatctatcttttctgaaatttg 601

                                                                       
Query: 182 tctcactctaaattgttgtaggacacactgtttcgatgcctagctgctgttaattagatc 241
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tttcactctaaattgttgtaggacacactgtttcgatgcctagctgctgttaattagatc 541

                                                                       
Query: 242 agcacaggcgctggagctttggttttccttttgagtgttgccaccagctgcaaaacatcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agcacaggcgctggagctttggttttccttttgagtgttgccaccagctgcaaaacatcc 481

                                                                       
Query: 302 atttcctcataattgattctcaagtttatttgcaatgttccatgaggcatagcctactga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atttcctcataattgattctcaagtttatttgcaatgttccatgaggcatagcctactga 421

                                                                       
Query: 362 aatgactcatcatgtttatgggaacaacataagaataaaggttatgtttgaatggttttg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aatgactcatcatgtttatgggaacaacataagaataaaggttatgtttgaatggttttg 361

                                                                       
Query: 422 ccatattaaatttagactaaaaacatggtttcttggaagttattttaagccagcttttaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccatattaaatttagactaaaaacatggtttcttggaagttattttaagccagcttttaa 301

                                                                       
Query: 482 atatacaaatttaattagatttcaatttgaaaatcactttcctttatgagaagtagtcag 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atatacaaatttaattagatttcaatttgaaaatcactttcctttatgagaagtagtcag 241

                                               
Query: 542 ttccaaaactgttaaaaggagggcctacttaaggta 577
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttccaaaactgttaaaaggagggcctacttaaggta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1067
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1057
Effective search space:   691278
Effective search space used:   691278
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)