BAC Information

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BAC

Clone NameMSMg01-333L21
Chromosome16 (Build37)
Map Location 52,115,482 - 52,301,457
singlet/doubletdoublet
Overlap geneCblb, Alcam
Upstream geneLOC627543
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L21.T7 (MSMg01no333_l21.b1)MSMg01-333L21.TJ (MSMg01no333_l21.g1)
ACCAG449415AG449416
length750741
length of high quality
(start - end)		675 (76 - 750)613 (72 - 684)
definitionCHROMAT_FILE: MSMg01no333_l21.b1 PHD_FILE: MSMg01no333_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:59 2005CHROMAT_FILE: MSMg01no333_l21.g1 PHD_FILE: MSMg01no333_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,300,925 - 52,301,457)(52,115,482 - 52,116,094)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGACCCGCGGA
ATTCTGCAGCCTTTTCCGACAAACTTAGCCTTTAGTCATTTGTGGCAAGC
CTTCAAAGCATATTAATGCAAACCTGTGATGCCTTTAGTTTAAAAACAAA
TCATTTCAGGCTTAGAATTATGTTCCATTGTTATAGATACTGCTATATGG
CACATGAAGCCAAAACCTACACACACACACAGATATACACAGGCACATAT
ACTGACACACACAGGTACACACAGACACACACAGGCACACACAAGCACAC
ACATACACACACAGGTACACACAGACACACATAGGCACACACACACACAG
AAACCTACACACAGGCACACACACACACACACACACAAACCTACACATGC
AGCAAATTGCTGCACTATCTAGGACTTACTATATGATTTGCTTTTAAAAA
TCTTCCTGTCCTATAATTTTTAATGTACCACCACATTTGTCCCTATATTA
TACTCCTCGCTACTTCAGTTGAGACAGACAGGCCAGCAAGGAAGAAAAAT
ATGAACTATGACATAATTCTATAATTGATACATGGTCCAGTAAAATATTT
TAGAGAGATTAACTCCGGAATGTTCTGAAGCAAACATTGGCCTAATTTTA
AATAAGTCAACTTGATTATATGAATGCTATAAACAAATTTGTAGTGTTGC
TTTTTCTTTTGATTTTATACTTGGNTATGGATCCTTGAATCATATTAAGA


ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGTTGCTTATCCCCGATAATGATGATAA
GTGAAAACGATTTTATTTAATCTACTGGTGACTTTAAACTTCAGAATAGT
ATTGTTTTCAAAAACAGACCCATAGGAGGTTGTCTCTACAAACAGTCAGA
TTATCATTTTATAAATTGTTTTGTTTGCTGCTTAATGACTGTTATTGTGA
CTTACTTCCCTGAAGGGATAGTCATTTCTAACAAAGCATTTAGAATGAAT
TAAAATAGAAAACAAACCATTGTTCATAAGATGTTATGATACTCATAAAT
ATAATTTCAGGTCAGCCCTTATGAAAGCAGGGAATAGAAAACCAGCTTTC
AAACCAGAGCCCTGCTCTCTGCCTGTGTAGCAGCCATTAGCCCCATCTGC
TGAGAGCCTTGGGAACACAGAATGCCCATGACAAGGGGAATAGAAGAGCC
TGCCTGTGCCAGATTATTAGGGGACTCCATTTACTATTTCAAAAGTTCAG
CCTTATCTTTACTTCCTATTATTCTATTCACCAGGAGATAATAGCAATAT
GTAGTAAAAGAACATTATTGAAGACATCTGTCAAAGTAAGTTATACAAAT
CTTCATATTTTGTAATAATGTTTATAATCCAGAAAAGAAAGTACCGTTAA
TCCAGAAACATTTTCAGTCTGGCACATTTCCTAACTCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l21.b1 MSMg01no333_l21.b1 CHROMAT_FILE:
MSMg01no333_l21.b1 PHD_FILE: MSMg01no333_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:59 2005
         (675 letters)



>mm_chr16_52300403_52301477
          Length = 1075

 Score = 1017 bits (526), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                        
Query: 143  tacacacacacacagatatacacaggcacatatactgacacacacaggtacacacagaca 202
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1055 tacacacacacacagatatacacaggcacacatactgacacacacaggtacacacagaca 996

                                                                        
Query: 203  cacacaggcacacacaagcacacacatacacacacaggtacacacagacacacataggca 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  cacacaggcacacacaagcacacacatacacacacaggtacacacagacacacataggca 936

                                                                        
Query: 263  cacacacacacagaaacctacacacaggcacacacacacacacacacacaaacctacaca 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  cacacacacacagaaacctacacacaggcacacacacacacacacacacaaacctacaca 876

                                                                        
Query: 323  tgcagcaaattgctgcactatctaggacttactatatgatttgcttttaaaaatcttcct 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  tgcagcaaattgctgcactatctaggacttactatatgatttgcttttaaaaatcttcct 816

                                                                        
Query: 383  gtcctataatttttaatgtaccaccacatttgtccctatattatactcctcgctacttca 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  gtcctataatttttaatgtaccaccacatttgtccctatattatactcctcgctacttca 756

                                                                        
Query: 443  gttgagacagacaggccagcaaggaagaaaaatatgaactatgacataattctataattg 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  gttgagacagacaggccagcaaggaagaaaaatatgaactatgacataattctataattg 696

                                                                        
Query: 503  atacatggtccagtaaaatattttagagagattaactccggaatgttctgaagcaaacat 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  atacatggtccagtaaaatattttagagagattaactccggaatgttctgaagcaaacat 636

                                                                        
Query: 563  tggcctaattttaaataagtcaacttgattatatgaatgctataaacaaatttgtagtgt 622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  tggcctaattttaaataagtcaacttgattatatgaatgctataaacaaatttgtagtgt 576

                                                                 
Query: 623  tgctttttcttttgattttatacttggntatggatccttgaatcatattaaga 675
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 575  tgctttttcttttgattttatacttggttatggatccttgaatcatattaaga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_l21.g1 MSMg01no333_l21.g1 CHROMAT_FILE:
MSMg01no333_l21.g1 PHD_FILE: MSMg01no333_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:59 2005
         (613 letters)



>mm_chr16_52115282_52116294
          Length = 1013

 Score = 1116 bits (577), Expect = 0.0
 Identities = 604/613 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttgcttatccccgataatgatgataagtgaaaacgattttatttaatctactggtga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctgttgcttatccccgataatgatgataagtgaaaacgattttatttaatctaccggtga 260

                                                                       
Query: 61  ctttaaacttcagaatagtattgttttcaaaaacagacccataggaggttgtctctacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttaaacttcagaatagtattgttttcaaaaacagacccataggaggttgtctctacaa 320

                                                                       
Query: 121 acagtcagattatcattttataaattgttttgtttgctgcttaatgactgttattgtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtcagattatcattttataaattgttttgtttgctgcttaatgactgttattgtgac 380

                                                                       
Query: 181 ttacttccctgaagggatagtcatttctaacaaagcatttagaatgaattaaaatagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacttccctgaagggatagtcatttctaacaaagcatttagaatgaattaaaatagaaa 440

                                                                       
Query: 241 acaaaccattgttcataagatgttatgatactcataaatataatttcaggtcagccctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaccattgttcataagatgttatgatactcataaatataatttcaggtcagccctta 500

                                                                       
Query: 301 tgaaagcagggaatagaaaaccagctttcaaaccagagccctgctctctgcctgtgtagc 360
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 501 tgaaagcagggaatagaaaaccagctttcaaaccagagccctgttctctgcctgcgtagc 560

                                                                       
Query: 361 agccattagccccatctgctgagagccttgggaacacagaatgcccatgacaaggggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccattagccccatctgctgagagccttgggaacacagaatgcccatgacaaggggaat 620

                                                                       
Query: 421 agaagagcctgcctgtgccagattattaggggactccatttactatttcaaaagttcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 agaagagcctgcctgtgccagattattaggggactccatttactatttcaaaagttcagt 680

                                                                       
Query: 481 cttatctttacttcctattattctattcaccaggagataatagcaatatgtagtaaaaga 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 cttatctttacttcctattattctatccaccaggagataatagcaatatgtagtaaaaga 740

                                                                       
Query: 541 acattattgaagacatctgtcaaagtaagttatacaaatcttcatattttgtaataatgt 600
            |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 741 gcattattgaagaaatctgtcaaagtaagttgtacaaatcttcaaattttgtaataatgt 800

                        
Query: 601 ttataatccagaa 613
           |||||||||||||
Sbjct: 801 ttataatccagaa 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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