Query= MSMg01no333_o09.b1 MSMg01no333_o09.b1 CHROMAT_FILE:
MSMg01no333_o09.b1 PHD_FILE: MSMg01no333_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:10 2005
(641 letters)
>mm_chr16_34486218_34487257
Length = 1040
Score = 1083 bits (560), Expect = 0.0
Identities = 591/604 (97%), Gaps = 6/604 (0%)
Strand = Plus / Minus
Query: 38 tattttttatctatatatctgcatatatatatgtatatacatatacatatctcctataca 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 tattttttatctatatatctgcatatatatatgtatatacatatacatatctcctataca 981
Query: 98 ctcattacttctacgagtaggtcaggatatggaatcaccagataaaagattttgattgtt 157
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 ctcattacttctatgagtaggtcaggatatggaatcaccagataaaagattttga----- 926
Query: 158 tttttttttttaattttctctgcagaccttagcatgctgtctagtacatagtagatgctc 217
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ttttttttttaaattttctctgcagaccttagcatgctgtctagtacatagtagatgctc 866
Query: 218 agtaaataatgttaaatagatgaatgctttttttctactctggaatgatcaatcgcgcct 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 agtaaataatgttaaatagatgaatgctttttttctactctggaatgatcaatcgcgcct 806
Query: 278 gagccagttgtttaaatatatatataatagaatttgagtagcggcagagaagatatttca 337
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gagccagttgtttaaa-atatatataatagaatttgagtagcggcagagaagatatttca 747
Query: 338 aacttttcaggggacaccactgccaactccacagcaccctgatatttatttctctttcat 397
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 746 aatttttcaggggacaccactgccaactccacagcactctgatatttatttctctttcat 687
Query: 398 gtttgtaaaatattgctcaaagcacccatgagcacctggctacttcttagccactttatc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtttgtaaaatattgctcaaagcacccatgagcacctggctacttcttagccactttatc 627
Query: 458 agagcgttagagaagagttggcggtgggacctgcggcacctggctgaatgataaagtgtg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agagcgttagagaagagttggcggtgggacctgcggcacctggctgaatgataaagtgtg 567
Query: 518 agaaatagtgatttatttatttctacttgagacatttttctagtttgggaatgcctttgg 577
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agaaatggtgagttatttatttctacttgagacatttttctagtttgggaatgcctttgg 507
Query: 578 agcccctatgaaagaggccgtggatcagaattctcttaaggccattaattattgaacttg 637
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 agcccctatgaaagaggccgtggatcagaattcttttaaggccattaattattgaacttg 447
Query: 638 tttt 641
||||
Sbjct: 446 tttt 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_o09.g1 MSMg01no333_o09.g1 CHROMAT_FILE:
MSMg01no333_o09.g1 PHD_FILE: MSMg01no333_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:10 2005
(342 letters)
>mm_chr16_34324022_34324763
Length = 742
Score = 650 bits (336), Expect = 0.0
Identities = 342/346 (98%), Gaps = 4/346 (1%)
Strand = Plus / Plus
Query: 1 caaggcccctttagccagtatcttgctttattatgcaaaccttaactttgttcccttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caaggcccctttagccagtatcttgctttattatgcaaaccttaactttgttcccttatg 256
Query: 61 tatttattatctgtctgttggtccatccatccatccatccatccatcca----accacac 116
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 257 tatttattatctgtctgttggtccatccatccatccatccatccatccatccaaccacac 316
Query: 117 aaggaagaaccaagatgcaaaattcttgtgcccatgggtcttgcatgtcattaggaacac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaggaagaaccaagatgcaaaattcttgtgcccatgggtcttgcatgtcattaggaacac 376
Query: 177 cagagagtaagctgatgtggatctactaggcatgtattttggagccatgtaaaatagatc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cagagagtaagctgatgtggatctactaggcatgtattttggagccatgtaaaatagatc 436
Query: 237 tgggggaaaggtagagagcataaggggatgacgaatgctacaaaagaaagagccagggca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgggggaaaggtagagagcataaggggatgacgaatgctacaaaagaaagagccagggca 496
Query: 297 ggctttcaagcagcagtacctaggcttgtctctaggggaagtaaga 342
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggctttcaagcagcagtacctaggcttgtctctaggggaagtaaga 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
