BAC Information

Click to search

BAC

Clone NameMSMg01-333O17
Chromosome16 (Build37)
Map Location 35,402,954 - 35,403,255
singlet/doubletsinglet
Overlap genePdia5
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a
Downstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333O17.T7 (MSMg01no333_o17.b1)MSMg01-333O17.TJ (MSMg01no333_o17.g1)
ACCAG449549AG449550
length1,141747
length of high quality
(start - end)
---304 (56 - 359)
definitionCHROMAT_FILE: MSMg01no333_o17.b1 PHD_FILE: MSMg01no333_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:11 2005CHROMAT_FILE: MSMg01no333_o17.g1 PHD_FILE: MSMg01no333_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTCTCTTGTGTCCCCCCCCGATTTTGTTGTGGGGGTCGCTTCCCTCTC
AATTGTGGGCCGCTATGCGCGCCGCTGCTGTCCTCTCATCGTGTGGGTTG
TCTCGGTTGTTCCCCTGTACCGAAGTGCCCGCTTGTGTGACGCCCCTGCC
GCGCTGCGCTTGCTATGTCTTCTCTCGTCTCTTGTTGCACGAGGAGGTTG
CCTGCCCACACGCGCCCTTGCTTCACTAGTTCCCCGGGCTTGGCTAGTGC
GCGCACCGCTCTGCTGCGGAGTATTTCCGGCGGCCTCTTGCGTTACCCTC
TTTCGTTTTACCGTTCGCTGGTACTGCCTTCCCCTCGCGGTTTCAGCATC
CCCGCGCCCCCGGTCTGCGGATTTTTCTTGTGTCTCCATGGCCGTCGTCG
CCCGCGTGCGCGCAGCACTTTTAGCGATGTCTCCTCGCGCCCTCCCTCCG
CTGCTCCCGCTCTGGTTTCTGGCCGTACCCGTCCTTCCGATTGTTTGCCC
GCCCGTTTTTCCCTGTGTGGGCTACTTGCTCGTTCCGCTTCTGTTTCGCT
ATGTCTCGCTCTTTGTCGCCCGGGAGCTGTTTACCGTCCTGCGAGGAACT
CCTTTTGTCTCGCCCTTACACTTACCGTTTTCTATTCACTTTCCTGCTGC
GTTATCTGTGTATCTTTCGCCTCTGGCGTCCCCTCTCTAGTCCGATCCTT
GTTTCCTTCGTCGGTTCCTTCGGCTCGCCCTTTGTTTTTGTCCTCGCCCG
CCCCGGCCTGTCGCCGCGTTCTTCTTCGCGCTCTTCCGTTGTGTTTGCCG
GCGAGCTGGTATGTGTTCTCCCGCGCGTCTTTACTTTTCTTTGTCTGCGC
TCGTTTCATTGGCGCCCGCGCCGCGGTCTTTTTCCTCTGTCGCACGCTCG
CCCTCTTCTTTTGTCGGCTACCTTGTCCTTCCACATTATGTCTCGTTGAT
TCGGCCGCCGGTTGATCGGCGCGGCCTGTCTATACTTAATTATGCCCCTC
TCGCATATCTAGTCGCCGCTTATATGCGCGGCGGAGTTGACTCGTTGTGT
GAGCCGCTGCCGTCTCGTGTCGATGTTGCTGCGTGCGTATTCTACGAGTT
CTCCGCTCGCCATCGCAATCTTGCTGCTCCTGTGCGGTGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCCCATCCTATCTCTGGTGCTCTCTCAGAGTGCAGCAAGGTATC
CTGGCACCTACAGCTCCGCCTCTGTCATCCTGGAGGTACTTGCAGAGCTA
CCTCCATTTGTCTCTGTCAAATCCATGCCCAGGACAGCGAGCTATCTCTA
TTCACACGTGCAGCCTTACCTTTCCGTTTTGGTACTACTCTTGAGTTTTC
TGGGACAGTCTATTTATTGTGGGAAGTCTGCTTAGCTTGTGCCTGGACCA
GAGGAAGGATCTCACATGGGAAAATAGGGAGTTGTAATAGCAGCACACAT
GACTCACGGCCCAGTATATGTATAAGTTCCCATATAAACCTAATGAAGCC
TGGCACCCCACAGGCTCCTATGACTAAGTCCAATGGCTGGAAACAATCTT
TGCCACCATCTCTACCAGTCCCCTTATGGTAGGAAGAATAGGGAATTCAA
GGTCTGGTGACTTAGCTCAGTGGCAGATTGCTTACCTAGTAGAAATTCAG
TCTCCAGCCCTGCCCTCCAATTAACAAAAATACCAATAAACCTTCTAGGA
GAAAGGAACGTGGTGACCCGCCCAATAACACGTCGTTCCCTGAATTCCTG
GAAATTCAAGCCTTGCTTAAAGGGCCCCCTTAACTACCCATCAAGTTGGG
GGGTTCAATTCTCCTTGCTTGTTAAACACAGGCCTTGTTTAACTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_o17.g1 MSMg01no333_o17.g1 CHROMAT_FILE:
MSMg01no333_o17.g1 PHD_FILE: MSMg01no333_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:12 2005
         (304 letters)



>mm_chr16_35402754_35403458
          Length = 705

 Score =  478 bits (247), Expect = e-139
 Identities = 289/303 (95%), Gaps = 3/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccccatcctatctctggtgctctctcagagtgcagcaaggtatcctggcacctacagct 60
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 201 tccccatcctatccctggtgctctctcagagtgcagcaaggtttcctggcacctacagca 260

                                                                       
Query: 61  ccgcctctgtcatcctggaggtacttgcagagc-tacctccatttgtctctgtcaaatcc 119
           || |||||||||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 261 ccacctctgtcattctggaggtacttgcag-gcctacctccatttgtctctgtcaaatcc 319

                                                                       
Query: 120 atgcccaggacagcgagctatctctattcacacgtgcagccttacct-ttccgttttggt 178
           ||||||||||||||||||||||||| |||||| | |||||||||||| ||| ||||||||
Sbjct: 320 atgcccaggacagcgagctatctctgttcacatgcgcagccttacctgttctgttttggt 379

                                                                       
Query: 179 actactcttgagttttctgggacagtctatttattgtgggaagtctgcttagcttgtgcc 238
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 actactcttgagttttctgggatagtctatttattgtgggaagtctgcttagcttgtgcc 439

                                                                       
Query: 239 tggaccagaggaaggatctcacatgggaaaatagggagttgtaatagcagcacacatgac 298
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggaccagaagaaggatctcacatgggaaaatagggagttgtaatagcagcacacatgac 499

              
Query: 299 tca 301
           |||
Sbjct: 500 tca 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 705
Length adjustment: 9
Effective length of query: 295
Effective length of database: 696
Effective search space:   205320
Effective search space used:   205320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)