BAC Information

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BAC

Clone NameMSMg01-335M15
Chromosome16 (Build37)
Map Location 81,775,621 - 81,913,539
singlet/doubletdoublet
Overlap geneLOC621470, LOC435484, Pgk1-ps1
Upstream geneLOC100039724, Ncam2
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335M15.T7 (MSMg01no335_m15.b1)MSMg01-335M15.TJ (MSMg01no335_m15.g1)
ACCAG450963AG450964
length743739
length of high quality
(start - end)
432 (62 - 493)464 (76 - 539)
definitionCHROMAT_FILE: MSMg01no335_m15.b1 PHD_FILE: MSMg01no335_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:40 2005CHROMAT_FILE: MSMg01no335_m15.g1 PHD_FILE: MSMg01no335_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,775,621 - 81,776,065)(81,913,115 - 81,913,539)
sequence
GGTACCATATACGACTCACTATATTTTCCAGGATCCGCGGAATTCATTTT
ATTTTACCCAATAAAAGGAAATGTTTTATTTTGGTAAATGTTTAGTCTAA
ATAATTGTTTGCTTCTCTTTATTTTATAAGAAATACTACAACAATTCTGC
TCTATACCTGCAAAGGAGAAGTGAGTAAGTCTAACAACCAGTTGAAAATT
TAGTATTAAGGAATTTTTAGCACAAGAATATTTTTTATATCTGGAATCTC
TAAGAGTCTCTTAATGTCAATCAGACATATATATGTGTGATTGTACACAT
TTTTATGTGGTACATTTACTAGAAATTTAATAAAACAAATGAATATATAT
ATAATATTTGTTAAAATACATAATAAAAAACTTGTTAACTCTGAACTATT
GATAATGCTTTAAATAAAAATTATTTACTGATACAACAAGTGATTATATA
TATATATATATATATATATATATATATATATATATATATATACATGTCGC
CTATTCTTAGCTGCCAACTTGACTATCTTTGCTAATGACTTCCTCTTTCA
CTTGAATGCTTACTTTTGTCCCTTATTTTGCAGTCTTGTTCATACACGTC
TTTCGACCCTGTATCTCGTATTCTCCCCATCTCCCACCTCCTCTTGCCTT
ATTATCTCCCCACACCAATTTCTTCCCTCCAACCCCTATCCGTCTTCTTC
GCTTTTTATCACCTCTCCTTTTTTTCTTTCTTTCCCTCCCTCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAAGATTATTTAATCAGAAGA
GTACTAGGCTTTTAATTGTTTTACTTTTGTGGTAATCACAGTATAAATAA
ATAACCCATTTCTATGTCCAGAAAAAAATATTTTGAAAACTACATATAGG
TTTTCTGTACTATTGAACCTAGGTCCAATATTAGAGAAGGTATTTGTGTG
TAAACAGAGTATAAAGATTATCCTTAAGTCAATGCCTATATATGTCACTT
AGGAATCCTTAAAACCCCAATTTTATTTTACTTATTCTCTCACAGGGCAT
AACTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTATAAGCTACTGATGGTTTGGATGCTGACCCT
TAAATTGCATTTTGAAAAGTACAACAATAAGTGCAAACCAAGTTCAGGAG
AAAGATGTTCTTTTCTATACCTAAACTCGTAAATGGTACATTAATAAAAC
TGGGTCAAGGTTCTGCCATTATTATAAAAATAAACTGGATTGTGGCTAAA
AATAAAAGAAATTATTCCCAATGATCAGCGTAATTTGTTTCCCCAACATG
TCTATGTGAAAATACATTCGACTTTTTCATAAATCCCTAATTGCACCTGT
TTGGAACCGTTAAAGAAAAAGTTTTATTAATCCCATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_m15.b1 MSMg01no335_m15.b1 CHROMAT_FILE:
MSMg01no335_m15.b1 PHD_FILE: MSMg01no335_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:40 2005
         (432 letters)



>mm_chr16_81775421_81776252
          Length = 832

 Score =  783 bits (405), Expect = 0.0
 Identities = 430/445 (96%), Gaps = 14/445 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaggaaatgttttattttggtaaatgtttagtctaaataattgtttgcttctcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaaggaaatgttttattttggtaaatgtttagtctaaataattgtttgcttctcttta 260

                                                                       
Query: 61  ttttataagaaatactacaacaattctgctctatacctgcaaaggagaagtgagtaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttataagaaatactacaacaattctgctctatacctgcaaaggagaagtgagtaagtc 320

                                                                       
Query: 121 taacaaccagttgaaaatttagtattaaggaatttttagcacaagaatattttttatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacaaccagttgaaaatttagtattaaggaatttttagcacaagaatattttttatatc 380

                                                                       
Query: 181 tggaatctctaagagtctcttaatgtcaatcagacatatatatgtgtgattgtacacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaatctctaagagtctcttaatgtcaatcagacatatatatgtgtgattgtacacatt 440

                                                                       
Query: 241 tttatgtggtacatttactagaaatttaataaaacaaatgaatatatatataatatttgt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatgtggtatatttactagaaatttaataaaacaaatgaatatatatataatatttgt 500

                                                                       
Query: 301 taaaatacataataaaaaacttgttaactctgaactattgataatgctttaaataaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaatacataataaaaaacttgttaactctgaactattgataatgctttaaataaaaat 560

                                                                       
Query: 361 tatttactgatacaacaagtgattatatatatatat-------at---atatat-at--- 406
           ||||||||||||||||||||||||||||||||||||       ||   |||||| ||   
Sbjct: 561 tatttactgatacaacaagtgattatatatatatatggtggctattttatatattatttt 620

                                    
Query: 407 atatatatatatatatatatatata 431
           |||||||||||||||||||||||||
Sbjct: 621 atatatatatatatatatatatata 645



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatatatatatatatatatatatatatatatatatatatatatatata 620



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tatatatatatatatatatatatatatatatatatatatatatatata 622



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tatatatatatatatatatatatatatatatatatatatatatatata 624



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tatatatatatatatatatatatatatatatatatatatatatatata 626



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatatatatatatatatatatatatatatatatatatatatatatata 628



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatatatatatatatatatatatatatatatatatatatatatatata 630



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatatatatatatatatatatatatatatatatatatatatatatata 632



 Score = 91.6 bits (47), Expect = 9e-23
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                          
Query: 385 atatatatatatatatatatatatatatatatatatatatatatata 431
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atatatatatatatatatatatatatatatatatatatatatatata 634



 Score = 70.3 bits (36), Expect = 2e-16
 Identities = 45/48 (93%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                           
Query: 384 tatatatatatatatatatatatatatatatatatatatatatatata 431
           |||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct: 653 tatatatatatatatatatatatatatatatataaa-ata-atatata 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 248
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 15
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_m15.g1 MSMg01no335_m15.g1 CHROMAT_FILE:
MSMg01no335_m15.g1 PHD_FILE: MSMg01no335_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:40 2005
         (464 letters)



>mm_chr16_81913062_81913925
          Length = 864

 Score =  725 bits (375), Expect = 0.0
 Identities = 422/461 (91%), Gaps = 36/461 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcaagattatttaatcagaagagtactaggcttttaattgttttacttttgtggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcttcaagattatttaatcagaagagtactaggcttttaattgttttacttttgtggtaa 419

                                                                       
Query: 61  tcacagtataaataaataacccatttctatgtccagaaaaaaatattttgaaaactacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 418 tcacagtataaataaataacccatttctatgtccagaaaaaaatattttgaaaactatat 359

                                                                       
Query: 121 ataggttttctgtactattgaacctaggtccaatattagagaaggtatttgtgtgtaaac 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 358 ataggttttctgtactattgaacataggtccaatattagagaaggtatttgtgtgtaaac 299

                                                                       
Query: 181 agagtataaagattatccttaagtcaatgcctatatatgtcacttaggaatccttaaaac 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agtgtataaagattatccttaagtcaatgcctatatatgtcacttaggaatccttaaaac 239

                                                                       
Query: 241 cccaattttattttacttattctctcacagggcataactttatttatttatttatttatt 300
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 238 cccaattttattttacttattctctcacagggcataac---------------------- 201

                                                                       
Query: 301 tatttatttatttatttatttatttatttatttatttatttattataagctactgatggt 360
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 --------------tttatttatttatttatttatttatttattataagctactgatggt 155

                                                                       
Query: 361 ttggatgctgacccttaaattgcattttgaaaagtacaacaataagtgcaaaccaagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttggatgctgacccttaaattgcattttgaaaagtacaacaataagtgcaaaccaagttc 95

                                                    
Query: 421 aggagaaagatgttcttttctatacctaaactcgtaaatgg 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  aggagaaagatgttcttttctatacctaaactcgtaaatgg 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)