BAC Information

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BAC

Clone NameMSMg01-336C17
Chromosome16 (Build37)
Map Location 62,354,490 - 62,354,813
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336C17.T7 (MSMg01no336_c17.b1)MSMg01-336C17.TJ (MSMg01no336_c17.g1)
ACCAG451254AG451255
length7481,256
length of high quality
(start - end)
326 (46 - 371)---
definitionCHROMAT_FILE: MSMg01no336_c17.b1 PHD_FILE: MSMg01no336_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:10 2005CHROMAT_FILE: MSMg01no336_c17.g1 PHD_FILE: MSMg01no336_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGAAGTCTT
GTTTCCTACCACATGAGAGGTCAAAAAAAATCAAATTTATTCTTCATAAA
CCCAGTAGCATTTGTAACCTATAGATTGAACCACATCATTCCTCATGTTC
CTGTACATGGTACAAGTCTTACATTAACATATATCATGAAGAGCAATATC
AAGAAACTGTAAACAAAATTGATATTTATTATGAATAATTAATTTAGGCT
ATTTCACTAAATATTTTTAATAACATGCCTTTCTAAAACAATTTCTTTGT
TTTCTAATGCTAAAACAAATGGACTAAAATATTACGAGAAATAATGCACA
TAACGTTTTTGGTGTATGACACTAATGATAGCTGATGCTTAAGAAGGCCT
ATATTCTACAGTTTATGTATTTCAACACTTAACCACTTCCCACAATACAC
ACACACACACACACACTACATTTTACTCATTCTCACTACACAGGCTATCA
TACTTATAATAACAAGTATCTTATTTCCAGATTTATCTTGTTTCCTGAAA
TAAAATGGTACCTGACATACATTTTTTTTAAAAAACGTATAAATTACTCT
AATTTATTATGACCCCCTTTTGCACTCTATATTTCGCTTAAATCCCCCCG
CTGTTTATGCCTCCCTTGATGTTCTCCACTGCTTGCTCCCTTCCCGCGGA
CCCTAATTTTCTTTCTTTTTTCTATTCTCCGAAATCATTTTGTCTTTN
GCTGGGGCGGGCGCGGGGGCGTGGAGGGGCGAGGCCTCCCCCGGTGGCGC
GGTGGGGTGGGGGGGGGCGGGGCGTTCGCGCGCGTTCTCTCCACCTTCTT
CTCANTTGTGGGCGTCTTTTGTCTGTACGTTGCTTCGTGTTCCTTGCGTC
GTTCACGCGTGCAGCCCATCCGGGCGCCGAGTATTTCGCGTGCGCGGAAT
TTTGCGGATGCGTGACGGCGGGCGTGTATTGTGGGGTGCTAGCTTGTCTT
GTCGTGCATGCTTTCGCGCTCCTGGCGCGCGTGCGTTCCGCCGTTGCCCC
GCTTTTCCCTTTGCGTNGACGCTCTTTTGCCTGGTTGTCTTGTTATATGT
CCTGTCTCGGCGCGGGCTCTGTGTCGTGTTCGCGCGTAGTCCGGCGTTTC
GGCCTCGCGCGTCTGTTNGGTGTCTGCTGTTGTTTGGGCGCGGGCGCCGC
AGCACTCGACTTTGTTAGTGTGCGGTTTGCGGCGCGTTCCCGATCGCCTC
TTGGANGATGGGTTTATGGGTAGTTGCAGAGAAGGGTGTGCTGCGGGTCT
CGTTTCGTTTGCTCCTCGTCGCGCTTTTCGCCTTTCGCCATGTCAGGCGC
CCAGCTGGTGGGTATGCGATGGTAGAGTCGTTATGTATGACACTGTATTG
CGTTGGTGCGGNTTGTGCCGTCATCGATTGATCCGCCTTTTTGTGGTCTA
GTCAGATATTGAATGTCCCGCTTTGCGTCGAGCGTGCTCCTGTGCCGGGG
TTTCCGCCTCTGATACTGCTTTATTATTTGCGCGTGCGCATCATTTGTGT
TCGTGTCGACGACTCAGTTCTNTGGTTCCCTCTTACGTCCCGTCGTCGCG
GCGTTATTCGCGCACGGTCAGTTGTGTTGTGTGTTGGCCCACGTCGCGCG
TCTAGTGTGTGGCGCCGCGCCGTTTTGTTTTTTCTCGCGCGCGCGCTGGC
CGGTTTATTTTATCTCTCTTGCGCGGACCGTGTGTGTGGAGTGATATGTA
TATTTCGGCAGCTTGCGTATATGAGCGGCGTGTGTTATGTGCGCGTATTA
TGATCACGCGGTTATTATTTGTTGTCCCGGTGTGCGCGCGGTGCGTGTTC
GTATATATAATACCGGCGCACCGTCGCGACGGTCATATTCTGTGTATAGT
GTAGATTTTGTCACTTCGCGCCGCCCGCCTTATTTCTCGCCCCTGACCGC
TTGTATCACGTCTGCGTATCTCATCGAGTCTCTTCGTCTGGTTTTCATTG
TGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_c17.b1 MSMg01no336_c17.b1 CHROMAT_FILE:
MSMg01no336_c17.b1 PHD_FILE: MSMg01no336_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:10 2005
         (326 letters)



>mm_chr16_62354287_62355013
          Length = 727

 Score =  557 bits (288), Expect = e-163
 Identities = 315/324 (97%), Gaps = 1/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttgtttcctaccacatgagaggtcaaaaaaaa-tcaaatttattcttcataaacccagta 62
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 204 ttgtttcctaccacatgagaggttaaaaaaaaatcaaatttattcttcataaacccagta 263

                                                                       
Query: 63  gcatttgtaacctatagattgaaccacatcattcctcatgttcctgtacatggtacaagt 122
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 gcatttgtaacatatagattgaaccacatcattcctcaagttcctgtacatggtacaagt 323

                                                                       
Query: 123 cttacattaacatatatcatgaagagcaatatcaagaaactgtaaacaaaattgatattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttacattaacatatatcatgaagagcaatatcaagaaactgtaaacaaaattgatattt 383

                                                                       
Query: 183 attatgaataattaatttaggctatttcactaaatatttttaataacatgcctttctaaa 242
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 attatgaataattaatttaggctatttcactaagtatttttaataacatgcctttctaaa 443

                                                                       
Query: 243 acaatttctttgttttctaatgctaaaacaaatggactaaaatattacgagaaataatgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 444 acaatttctttgttttctaatgctaaaacaaatggactaaaatattaggagaaacaatgc 503

                                   
Query: 303 acataacgtttttggtgtatgaca 326
           ||| || |||||||||||||||||
Sbjct: 504 acagaaagtttttggtgtatgaca 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 727
Length adjustment: 9
Effective length of query: 317
Effective length of database: 718
Effective search space:   227606
Effective search space used:   227606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)