Query= MSMg01no337_c03.b1 MSMg01no337_c03.b1 CHROMAT_FILE:
MSMg01no337_c03.b1 PHD_FILE: MSMg01no337_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:24 2005
(576 letters)
>mm_chr16_56242614_56243588
Length = 975
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%), Gaps = 1/572 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctttttactagctgagtagtactccattgtgtaaatgtaccacattttctg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctttttaatagctgagtagtactccattgtgtaaatgtaccacattttctg 264
Query: 65 tatccattcctctgttgaggggcatctgggttctttccagcttctggctattataaataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatccattcctctgttgaggggcatctgggttctttccagcttctggctattataaataa 324
Query: 125 ggctgctatgaacatagtggagcatgtgtccttcataccggttgggacatcttctggata 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ggctgctatgaacatagtggagcatgtgtccttcatactggttgggacatcttctggata 384
Query: 185 tatgcccagaagaggtattgctggatcctccggtagtactatgtccaattttctaatttt 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tatgcccagaagaggtattgctggatcctctggtagtactatgtccaattttctaatttt 444
Query: 245 aatgccaacaaccaaagtcttctaatgatctaccaaagtggttatttaacaaagagataa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgccaacaaccaaagtcttctaatgatctaccaaagtggttatttaacaaagagataa 504
Query: 305 attacatacttgtgaagtacttttagggtaattgaaacaagtctaaaaatcattgccttt 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attacatatttgtgaagtacttttagggtaattgaaacaagtctaaaaatcattgccttt 564
Query: 365 aaatggcttcctttttttttttaaccttcattactttttaaatctttttaaatttttaaa 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatggcttcctttttttttt-aaccttcattactttttaaatctttttaaatttttaaa 623
Query: 425 aaatttctagacagggtctttctatgtaggtctggctgtcctggaactacagcctggact 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 aaatttctagacagggtctttctatgtaggtctgcctgtcctggaactacagcctggact 683
Query: 485 caaattcactttcttttctctctctttctttcttttacctccctccctcccttcctcccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaattcactttcttttctctctctttctttcttttacctccctccctcccttcctcccc 743
Query: 545 ctctccctcccttcccttcccttcccttccct 576
||||||||||||||||||||||||||||||||
Sbjct: 744 ctctccctcccttcccttcccttcccttccct 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_c03.g1 MSMg01no337_c03.g1 CHROMAT_FILE:
MSMg01no337_c03.g1 PHD_FILE: MSMg01no337_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:24 2005
(541 letters)
>mm_chr16_56310805_56311745
Length = 941
Score = 1031 bits (533), Expect = 0.0
Identities = 539/541 (99%)
Strand = Plus / Minus
Query: 1 aatatctgaatttccaaattctttgggacaggcaagaactaagagtgagtgggaatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatctgaatttccaaattctttgggacaggcaagaactaagagtgagtgggaatggtt 682
Query: 61 tcaaatttaatagacagaatcataagaaccaactccctaaaatgtttctagaaatggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaatttaatagacagaatcataagaaccaactccctaaaatgtttctagaaatggctt 622
Query: 121 cccactatgctaacatcctcctttctcttcctatcacacacaagcatttgtttttctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccactatgctaacatcctcctttctcttcctatcacacacaagcatttgtttttctgac 562
Query: 181 atttgaaggcactatgatttctgcacacaccataaagccagagcactataattgatgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgaaggcactatgatttctgcacacaccataaagccagagcactataattgatgaac 502
Query: 241 aatggctcagacgaggcttcatttcttccagaactctggcacaaaaaggtgaatcagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggctcagacgaggcttcatttcttccagaactctggcacaaaaaggtgaatcagaga 442
Query: 301 gtagacagagattaagtgtccacctagcagtaggctgacgtccaaggaatttttgatgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagacagagattaagtgtccacctagcagtaggctgacgtccaaggaatttttgatgca 382
Query: 361 aattacaattccaagtggtgcacgcgaacggagcatcagcagacattgtctcctcagcag 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aattacaattccaagtggtgcacgcgaactgagcatcagcagacattgtctcctcagcag 322
Query: 421 tgaggaaagcttcctcttcctaatgcttcagtcacatcaggttcagagagctttcatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgaggaaagcttcctcttcctaatgcttcagtcacatcaggttcagagagcttccatttt 262
Query: 481 ggtttttctcatcagtgaaatccatccttcagggaaggactggcatttcaaacaggagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttttctcatcagtgaaatccatccttcagggaaggactggcatttcaaacaggagtc 202
Query: 541 a 541
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
