BAC Information

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BAC

Clone NameMSMg01-337E15
Chromosome16 (Build37)
Map Location 51,230,935 - 51,231,169
singlet/doubletsinglet
Overlap genenone
Upstream geneBbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337E15.T7 (MSMg01no337_e15.b1)MSMg01-337E15.TJ (MSMg01no337_e15.g1)
ACCAG452099AG452100
length760769
length of high quality
(start - end)		233 (64 - 296)567 (69 - 635)
definitionCHROMAT_FILE: MSMg01no337_e15.b1 PHD_FILE: MSMg01no337_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:37 2005CHROMAT_FILE: MSMg01no337_e15.g1 PHD_FILE: MSMg01no337_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GCATGATCTCTACATATGGATATGTAACTAAATAAAGAAGTCAGGAATTT
AAGTGAATATGAAGGGGATATTGGGGGAGTTGGAGAGGAAGAGGGAAGGT
TTGAATAGTATAAATATTGTGTAAAATTCTGCAAAAATTCAGACATTTCA
TCTAACTTTAGAGGTATTATATTTTCCCTAGTACAGAAATAACGAAATTG
AGACTTGGGGAAGTTAATTAATTTGTCTAAATCACACATTTAGAAATACA
TGGGAATGTTCTTATTTTTTTTGCTATACTTTCATTTACAACATGTAACT
GTAATTTTTTTTGTCTCTAAAACTATGCATTACCATGTTAATTGAGTGCG
TGTGTGTGTGCCCCCCTCTGTGTGTGTGTGCGCGTCTGTGTGTACAACCT
CAATCTTACCTTCCCTACTCTCTCTCTTTCTCTCACCCTCCTCCATCCTC
CTGACTCTTCCATTCTACTCCTTTCTCTTGCTCCTAACTTCATTTCCTCT
CTCCCTATCTTTCTTTTCATCCATCTTTTCTCTCATTCCTTTTCTCTTCA
CCGCTCCCCCCCCCCCTCTTTTCTCCTTCCTTCTTTCTTCTCTCTTTCCC
TCCCCTCCCTCCCTTCCCTTTCCTTTTCCTCCCCTTGCTCCTCCTCTCCC
CCACTCCCTTCCTTTTTCCTTTTCCCCCTTTTCTTTTCTCCACTTTTCCC
CCTTTCCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAGATATGTCGACCATTCCTAGTCCTGTTGT
AAACCCTTACCCAGGGGCACAGGTAAGAATTGAGGAGATGAAGTCAAATA
GCAATGTAATGGTGTAATTAAAGTCTATTATCAGCCAGCTTTAACTTAAT
CAAATGATTATCTGGGAAGTTCTTCCCTAATGAGATGAACACTGGGTAAA
ATTGATTTAGAATTTAGAATTTGGAAACATCAGGGAGAGGGAGCAGCAGA
TGCCTTCTCATAACAAACTATCACATCCTGAAATGACCACGTGGGAGAGA
CCAGGGAATGTCTCTCCATTCTAAGGGTCATAGTCTCATAGTCTTCCATC
TGTAATGGGCTAGATTCTGCCTATAGTTAGTAACCTGGGCAAAGAAGCAG
AGTCAGAGATGAGCAGCAGCATCTGCTGATAGCATCAAGTTCTATGGGCA
GGGCCTTGGTAGATTACTCATCCCACTGTGCCTTANATCAAACAACTCTT
GCCTGAACTATCATGAAATCATTGTTCTAAGTCACTGGGTTTGTGATGAG
TTATTACACGGGCAGAGGAAGCTACTATAGCTGTTAGTGTTTGTTTAGTT
CACAAACTCAGTTTTTACATAACACATTTGCCAGATGTTGCACATCATGC
CTATAAACTCCACCCTGGGAAGCTGAAGCAGGGGGATAAAAAAATAATTC
TAACCTGGGGCCATACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_e15.b1 MSMg01no337_e15.b1 CHROMAT_FILE:
MSMg01no337_e15.b1 PHD_FILE: MSMg01no337_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:37 2005
         (233 letters)



>mm_chr16_51230820_51231454
          Length = 635

 Score =  412 bits (213), Expect = e-120
 Identities = 229/235 (97%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatggatatgta--actaaataaagaagtcaggaatttaagtgaatatgaaggggatat 58
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atatggatatgtaacactaaataaagaagtcaggaatttaagtgaatatgaaggggatat 291

                                                                       
Query: 59  tgggggagttggagaggaagagggaaggtttgaatagtataaatattgtgtaaaattctg 118
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgttggagttggagaggaagagggaaggtttgaatagtataaatattgtgtaaaattctg 231

                                                                       
Query: 119 caaaaattcagacatttcatctaactttagaggtattatattttccctagtacagaaata 178
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 230 caaaaattcagacatttcatctaagtttagaggtattatattttccctagtacagaaata 171

                                                                  
Query: 179 acgaaattgagacttggggaagttaattaatttgtctaaatcacacatttagaaa 233
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aagaaattgagacttggggaagttaattaatttgtctaaatcacacatttagaaa 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 635
Length adjustment: 9
Effective length of query: 224
Effective length of database: 626
Effective search space:   140224
Effective search space used:   140224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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