BAC Information

Click to search

BAC

Clone NameMSMg01-337M14
Chromosome16 (Build37)
Map Location 83,025,781 - 83,026,342
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M14.T7 (MSMg01no337_m14.b1)MSMg01-337M14.TJ (MSMg01no337_m14.g1)
ACCAG452476AG452477
length756763
length of high quality
(start - end)
569 (40 - 608)437 (70 - 506)
definitionCHROMAT_FILE: MSMg01no337_m14.b1 PHD_FILE: MSMg01no337_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:16 2005CHROMAT_FILE: MSMg01no337_m14.g1 PHD_FILE: MSMg01no337_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTTACCTAACTTACTTCAAAATCTAGACTAGGTGAAGATTTAGAAAAGTG
TATCAGATTCTCGGTCTATTTCATGGTTGTGCATTTTCTGTCTTGCCTTC
ACCCCTGTGTTTCCAGCATCTTCACATCTCTGGGTTGTGAGCCTTAGAGC
AAAATGGAAGGAAACAAACTTGTGTTCTGTTCAAGCAATACATATATGGT
AAATTGTTAGAGGTTTAGGGAAAAATGTTTCATACAACAATTGATTATTT
TTTAAACATCAAAAACTTATGTTTCAACATCAACAAATGAAAAAACAGGA
ATTGGAATTTTCAGAAAATCAGTTGAATTCAGAATTAATAAGAAACTACA
TAGTAAGGTCTTAAAATACTAGAAAACCTAGATTTCTAATAGATAGTCAT
GGACCTATGGCTCCAGCTGCATATGTCACAGAAGTGGGAGGAGAGACCTC
TTTGGTCCTGTGAAGGCTCAATGACCCAGTGTAGGAGAATGCCAGTTCAG
GAAGGCAGCAGAAGTGGGTGGGTGGGAGGGGACACCCTCATAGAAGCAGG
GGGTGAGTGGGATAAGGGATTTCTGGAGGGGAAACCAAGAATGGGGATAA
CACTTCAAATATATTATATAAACACGCCCTTTAATAATTCCATGATCAAT
AAATAAGATGTCCTGACTGTTCTACAATAGAATGTAACTTTTGTTATGCA
GTTGGG
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTACGAG
GGTTATTTGGTTTTCTGGAGTCTAACTTCTTGAGTTCTTTATATATATTA
GATATTAGCCGCCTAATGGATTTAGGCTTGGTAAATATCTTCTCCCAATC
TGTTGGTTGCCCTTTTGTCTTATCGACAGTGTCTTTTGCCTTACGGAAGC
TTTGTAATTTTATGAGGTCCTATTTGTCGATTTATCCCGAGCTTATCCCT
GTCCCGCAGGAAATAAATTCTGGACACGCCAGGTTCTTCTGTGGTTAACT
TTACTTCAATAACATAGGGAGGTAGACAAAGAAGGCTCAGAAAGTGTGTG
GCTTAAATACTTTTTGGTGATGTGTTCTAAACTAGGACTGGTAGCAACAC
TCACGATTCTCATGCACCCAAGGGATAGGCTAAACACCCCAGGGGTTGGG
CTAGTGCCCTGTGGGATGGACCAGTGCCCCGGAAATGGGATGGTGACTTT
TGGCGGTCTTTTGCTTTTAGCACATGGGCATATAGCTTGTTCTTTGTTTA
TGGGCCATAAGGTCTTGCTTATACCGTTGCTTCTTTAAAAGGGAAAGGTT
ATTTGGGTTCTCCCCATCATTTCTTTTTTATATCCCTACTATCGGGTCTT
TGTTTTTGTATTTTCCCCTGCGGCTTATTCTTCAAATTTCTCATCATCTT
TTCCCATAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m14.b1 MSMg01no337_m14.b1 CHROMAT_FILE:
MSMg01no337_m14.b1 PHD_FILE: MSMg01no337_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:16 2005
         (569 letters)



>mm_chr16_83025735_83026704
          Length = 970

 Score =  920 bits (476), Expect = 0.0
 Identities = 542/564 (96%), Gaps = 4/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctcttacc-taacttacttcaaaatctagactaggtgaagatttagaaaagtgtatca 66
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttctcttaccaaaagttacttcaaaatctagactaggtgaagatttagaaaagtgtatca 549

                                                                       
Query: 67  gattctcggtctatttcatggttgtgcattttctgtcttgccttcacccctgtgtttcca 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 548 gattctcggtctatttcatggttgtgcattttctgtcttgccttcacccctgtgtttcta 489

                                                                       
Query: 127 gcatcttcacatctctgggttgtgagccttagagcaaaatggaaggaaacaaacttgtgt 186
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct: 488 gcatcttcacatctctgggttgtgagccttagagcaaaattgaaggaaataaatttgtgt 429

                                                                       
Query: 187 tctgttcaagcaatacatatatggtaaattgttagaggtttagggaaaaatgtttcatac 246
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 428 tctgttcaagcaatacatatatggtaaattgctagagttttagggaaaaatgtttcatac 369

                                                                       
Query: 247 aacaattgattattttttaaacatcaaaaacttatgtttcaacatcaacaaatgaaaaaa 306
           |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||
Sbjct: 368 aacaattgattattttttaaacatcaaaaacgaaggtttcaacatcaacaaatgaaaaaa 309

                                                                       
Query: 307 caggaattggaattttcagaaaatcagttgaattcagaattaataagaaactacatagta 366
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 308 caggaattggaattttcagaaaatcagttgaattcaaaattaataagaaactacatagta 249

                                                                       
Query: 367 aggtcttaaaatactagaaaacctagatttctaatagatagtcatggacctatggctcca 426
           ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
Sbjct: 248 aggtcttaaaatactagaaaacctagatttctaatagatagccagggacctatggcacta 189

                                                                       
Query: 427 gctgcatatgtcacagaagtgggaggagagacctctttggtcctgtgaaggctcaatgac 486
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 188 gctgcatatgtcacagaagtgggaggagagacc-c-ttggtcctgtgaaggctcaatgac 131

                                                                       
Query: 487 ccagtgtaggagaatgccagttcaggaaggcagcagaagtgggtgggtggga-ggggaca 545
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct: 130 ccagtgtaggagaatgccagttcaggaaggcagcagaagtgggtgagtgggaggggggca 71

                                   
Query: 546 ccctcatagaagcagggggtgagt 569
           ||||||||||||||||||||||||
Sbjct: 70  ccctcatagaagcagggggtgagt 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)