BAC Information

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BAC

Clone NameMSMg01-338G23
Chromosome16 (Build37)
Map Location 57,477,482 - 57,477,813
singlet/doubletsinglet
Overlap gene2610528E23Rik, 4631422O05Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338G23.T7 (MSMg01no338_g23.b1)MSMg01-338G23.TJ (MSMg01no338_g23.g1)
ACCAG452963AG452964
length750754
length of high quality
(start - end)
332 (163 - 494)424 (75 - 498)
definitionCHROMAT_FILE: MSMg01no338_g23.b1 PHD_FILE: MSMg01no338_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:04 2005CHROMAT_FILE: MSMg01no338_g23.g1 PHD_FILE: MSMg01no338_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATAGGGTTCGGATCCGCGGAATTCAGTGATGAATATCTGGAG
CTTTGATTAGAAATGCAGAGAAGGTTTTCTGTGGAGTGAAACTTCTTCTA
AAGTGTAAAAAATTGAAAGAAATGTGGAAAAGGAATTTCAGACTAATAGA
ATAGTACATCACAAGCCCTACTGTTTGGACTATTATGGCAAACTATAGAA
AGTTTGGCTTTATCATAGTCTGAACTATAACTGGTGGAAGTAGTGGAAAA
CAGAATTAAAAGTGCTTGTCTTGCTGTCATTCTCTGCTGAGTCCTATGAA
ATCATCTGGAATTTAGGAGGTAAAATTAACCAAATGGTTGACATACCTGG
ATATGAGATAGGGAATAAGAAAAAACTGAACAGGGAATATAGATTTGGAT
TTTTTCCATATTATTACTATTTAAAATCAGTAGCAGTGAAACTGGATGAG
AAAAGTATTTAGAATTAGCAATATACCAAAAGTGAACCCTCTAAGAGCAC
ATATGGAGAGAGGTGAATGAAAGAACATAGGAGAGAATGTGGGAATCCAA
CAGAGACGTANGGAGTTTGCTGTTCTTCACTAGGAAAATACCTTGCTGTA
AGCACGGCAGAACAAGGCTGAGAGTTCTTGGCGAATTATTAAGAAGAAAG
GAGTGGTAAGAACTCCTCTTGTAAGGTTGGCCTGGGGACACCCCCGCTTT
AAAAACCAAAAAAATAGGGGGAATTTGTGGGGGTTTTAAAACCTTTCCTG

NCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAAGGTTAACAAGCTGAAGGGCCC
AACTGAGGATGCTTCAATCCCACGTAGAAGGGAGAAGAAAGCAATCACGG
GGGGTGGGTGGGGAGGGACCTGGATGAGAAAGGGGACAAGGAGGGTAAGA
GGGGAACACGATCAGGTATTGGGTGGGGTGGAACAGGACTGAAGTTCTGA
GGGCCAGCAGAAAAAATGGAAACAGGGAACCTCGAGAGGTAGGAGGTGGG
GGGACCCTCCAGAATGTACCAGAGACCTGGGACATGAGAGACTCTCAGGA
CTCAAAGAGAGGGACCTTAGATGAAATGCCTTACAGTGGGGAGAGGAAAC
TTGTAGAACCTACCTCCAGCAGAGACAGGGCATCAAGTGAGGGATGGAGA
TGCCATCCCACAGTCCAAACTCTGAACCCTAATTGTTCCTGTCTGAAAGA
ACTTCAGGGATGGAGACCGAGGGAAAGGAGGTACAGCTCAAATTGGGATC
CAGTTCAAGGGGGAGGCCCAAGGCCTGACACTAGTACTGAGGTTATGGTG
TGCTCACCAAAGGGCCCTATCATAAATGGCCCCCAAAAAAACCCCCATGG
CGCTTGGAAAAGTATAATCTAAAATTTCCCCCCCCCCAAGGGAAAGAAAT
TGGTGACCCCTGGGGGTTGAATTATGGAAAGACGTGGAAAACCTTTAGAA
AAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_g23.b1 MSMg01no338_g23.b1 CHROMAT_FILE:
MSMg01no338_g23.b1 PHD_FILE: MSMg01no338_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:04 2005
         (332 letters)



>mm_chr16_57477282_57478013
          Length = 732

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccctactgtttggactattatggcaaactatagaaagtttggctttatcatagtctg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aagccctagtgtttggactattatggcaaactatagaaagtttggctttatcatagtctg 473

                                                                       
Query: 61  aactataactggtggaagtagtggaaaacagaattaaaagtgcttgtcttgctgtcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aactataactggtggaagtagtggaaaacagaattaaaagtgcttgtcttgctgtcattc 413

                                                                       
Query: 121 tctgctgagtcctatgaaatcatctggaatttaggaggtaaaattaaccaaatggttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctgctgagtcctatgaaatcatctggaatttaggaggtaaaattaaccaaatggttgac 353

                                                                       
Query: 181 atacctggatatgagatagggaataagaaaaaactgaacagggaatatagatttggattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atacctggatatgagatagggaataagaaaaaactgaacagggaatatagatttggattt 293

                                                                       
Query: 241 tttccatattattactatttaaaatcagtagcagtgaaactggatgagaaaagtatttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttccatattattactatttaaaatcagtagcagtgaaactggatgagaaaagtatttag 233

                                           
Query: 301 aattagcaatataccaaaagtgaaccctctaa 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aattagcaatataccaaaagtgaaccctctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)