Query= MSMg01no339_k19.b1 MSMg01no339_k19.b1 CHROMAT_FILE:
MSMg01no339_k19.b1 PHD_FILE: MSMg01no339_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:34 2005
(601 letters)
>mm_chr16_56235126_56236126
Length = 1001
Score = 1118 bits (578), Expect = 0.0
Identities = 593/602 (98%), Gaps = 8/602 (1%)
Strand = Plus / Minus
Query: 4 ggaattccagggttttcc----agggagagacaggaggatctctgaggcttgctggccat 59
|||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggaattccaggg----ccgggaagggagagacaggaggatctctgaggcttgctggccat 649
Query: 60 cctaaatgggcaagctcctggttcaaaaatacatcctgtctcaaaaattaggaagcttct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cctaaatgggcaagctcctggttcaaaaatacatcctgtctcaaaaattaggaagcttct 589
Query: 120 aaccaattcctcataatgtcagggagtacaatttttaaaatcttggttcacagaaggtcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaccaattcctcataatgtcagggagtacaatttttaaaatcttggttcacagaaggtcc 529
Query: 180 tgtttaaagaattcaagaacagctggctcagaagcttctcgaaagtcagttatctaacac 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 528 tgtttaaagaattcaagaacagctggctcagaagcttctcaaaagtcagttatctaacac 469
Query: 240 tgccatccatattctgcccattgagctacattatcctttcctgttactcctgtcccatga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgccatccatattctgcccattgagctacattatcctttcctgttactcctgtcccatga 409
Query: 300 tacatttgaaactgagacactcattatagtctctgaaggagcctctgtaagggacaaagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tacatttgaaactgagacactcattatagtctctgaaggagcctctgtaagggacaaagg 349
Query: 360 aaggaccactttgaaaggcaagtggatagacgagacagagatggctcactgggtaaaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaggaccactttgaaaggcaagtggatagacgagacagagatggctcactgggtaaaatg 289
Query: 420 tttgttatgcaagtgtgacgacctggattctgatgcccagaaactgacataaagccagat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tttgttatgcaagtgtgacgacctggattctgatgcccagaaactgacataaagccagat 229
Query: 480 gccctaaagagcatctgtaatcccagtggtccgggtaggaggccaaggcaggagaatgcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gccctaaagagcatctgtaatcccagtggtccgggtaggaggccaaggcaggagaatgcc 169
Query: 540 tgggagccagcaggtcagacagcctgagacacacatcagcaaacaacagaaactctgtct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgggagccagcaggtcagacagcctgagacacacatcagcaaacaacagaaactctgtct 109
Query: 600 ca 601
||
Sbjct: 108 ca 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_k19.g1 MSMg01no339_k19.g1 CHROMAT_FILE:
MSMg01no339_k19.g1 PHD_FILE: MSMg01no339_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:34 2005
(535 letters)
>mm_chr16_56056909_56057843
Length = 935
Score = 870 bits (450), Expect = 0.0
Identities = 497/528 (94%), Gaps = 27/528 (5%)
Strand = Plus / Plus
Query: 8 ctgctccgttcattgtctccttctattcagttgggccccagcctagagatgtcctactca 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 208 ctgctccgttcattgtctccttctattcagttgggccccagcctagagatgtcctaccca 267
Query: 68 cattcgggtaaggctgtccctcttcagctaagcccttctgaaagcactttgaaagatgca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cattcgggtaaggctgtccctcttcagctaagcccttctgaaagcactttgaaagatgca 327
Query: 128 ttcaagccaggcgtggtggcgcatgcctttagtcccagcacggctatacagagaaaccct 187
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 328 ttcaagccaggcgtggtggcgcatgcctttaatcctagcacggctatacagagaaaccct 387
Query: 188 gtctcaaaaaaccaaaaaaaagaaaaaaaaaaaaaagaaaaaagaaaaaagaaaagaaaa 247
||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 388 gtctcaaaaaaccaaaaaaaa-aaaaaaaaaaaaaa--aaaaagaaa------------- 431
Query: 248 gaaaagaaagatgcattcagaagtgtgtttccatggtgattctaaatctaaatccattca 307
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 432 -----gaaagatgcattcagaagtgtgtttccatggtgattctaaatc------cattca 480
Query: 308 ggttgacagattaatcatcacagctggtttgcacaaaaatgcagtgctctttcaagtctc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggttgacagattaatcatcacagctggtttgcacaaaaatgcagtgctctttcaagtctc 540
Query: 368 aaactcttttgtctattcaggtgctatgctgtaaaaacatagctttctgtgctaaaaata 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaactcttttgtctattcaggtgctatgctgtaaaaacatagctttctgtgctaaaaata 600
Query: 428 aaaaggatacaggacatgtaaagcaaagaaccttgttaactagtgggttattttgtttat 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaaggatacaggacatgtaaagcaaagaaccttgttaactagtgggttattttgtttag 660
Query: 488 ctactgaacacataaagaaaatatttcctggtaatgaacactatacag 535
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctactgaacacataaagaaaatatttcctggtaatgaacactatacag 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
