NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGTTGACAGATTTTTTCCCCCCACAAATTAAAAACATCAT
AGTATGTAGGGCAGTGGACCATGCCACCAAATAGATGAACTAGTAAGGTT
GTAGCAAGTTCAGAACCCTGTTAAATCTCATAATTGAGTACTTCGAGAGT
TCAAATTAGTTCTGGACTAGTTTCCTGTCCTGGAGCACTAGGACACACCA
CAAAGACCATGACAACTGGTCATGAAGCATAAAAACTTAGAGTTCTCCAT
GCTAATGAGGTATCTAGATAGGCCCTGAGTGTTTAGCTTCCCTTCCTGGG
CATCCGTTCCTGCAAAAGGTATTTAATATCATGTTTACCGGAAGGAAGAC
ATATGGATCCTCTTCCACTATGAAAAACAAACAAACAAACAAACAAACAA
CAACCCAGTTTGTACAAGCAAGGACTATTTGTTTCATCAAGAACAGCCTT
GGGTTGGGGAGGCCTTTGTCATACAGAGCCGTACAGTACATTAGGTTCTC
ACTCAGAGTCAAGCCAGATTCCACCCATGTCCCTGGCTGATCATGGGCTT
GCAGAACCGAATACCCAACTCCTCAGGGCCACCAGTGTCATTTGGGTGCA
CAGAAGTTTGAGAACCACAGCATCCTTCCTGCCCCCACTGTTTCTCAACT
GGAGAAAACAGGCTGGATCCCTATCTTGGACTGCA

NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCGAACTTAGGAATTAAAG
CTGACAACGATAACAAACAAACAAAAAAAAAATCTTTCAAACTTGTGGAA
ACTGAATAACTCACTAGTGATTCAAAAATGGAAGAAAAGAAATTGAGAAC
ATTTTGGAATTGAACGAAAATGACAGTGCGACAAAATCAAGTTCATGGTA
GATGATGAAGGAAGGATGTTGGTTCTTAGAAGCCAGTTCAGAGTACTAGG
AGCCAATATAAAATTATTGGATCTCATACTAGCAACTTAACAGCACACCT
GAAAGCTCTGGAGCAAAAGAGGAAATTACATTTCAAAGAAGTGATTGCAA
GAAATTATCCAAATAATAAAGCAAACAAATGAAACGAAACAAAACAACAA
CAACAAAACATAAGCACATACTTTAAAAACCTATACCACATCTAATTGGA
AAATGTAACAGAGATGAATAATTTCTTTAATATACACAATGTCCCAAAGT
TAAATCAAGATCAAATAAGCAATTTGAACAAACCTATAACCCCTAGTGAA
ATGGAAGTAGTCACTAAAAATCTCCCAAAACCCCCAAAACCAAACAAACA
AAAAACCACGACNACAAAAATTAACCTAGATTGTTTTACCACAGAATTCC
ACAGACATTTTAAGATAATTAATGCCCATACTTCTCTAATT

Query= MSMg01no340_b02.b1 MSMg01no340_b02.b1 CHROMAT_FILE:
MSMg01no340_b02.b1 PHD_FILE: MSMg01no340_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:02 2005
         (682 letters)



>mm_chr16_28107755_28108837
          Length = 1083

 Score =  679 bits (351), Expect = 0.0
 Identities = 387/413 (93%), Gaps = 24/413 (5%)
 Strand = Plus / Minus

                                                                        
Query: 279  gagtgtttagcttcccttcctgggcatccgttcctgcaaaaggtatttaatatcatgttt 338
            |||||||||||||||||||||||||||||||||||||||||               ||||
Sbjct: 1083 gagtgtttagcttcccttcctgggcatccgttcctgcaaaa---------------gttt 1039

                                                                        
Query: 339  accggaaggaagacatatggatcctcttccactatgaa--------aaacaaacaaacaa 390
            ||||||||||||||||||||||||||||||||||||||        ||||||||||||||
Sbjct: 1038 accggaaggaagacatatggatcctcttccactatgaaaaacaaacaaacaaacaaacaa 979

                                                                        
Query: 391  acaaacaaacaacaacccagtttgtacaagcaaggactatttgtttcatcaagaacagcc 450
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 978  acaaacaaacaacaacccagtttgtataagcaaggactatttgtttcatcaagaacagcc 919

                                                                        
Query: 451  ttgggttggggaggcctttgtcatacagagccgtacagtacattaggttctcactcagag 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  ttgggttggggaggcctttgtcatacagagccgtacagtacattaggttctcactcagag 859

                                                                        
Query: 511  tcaagccagattccacccatgtccctggctgatcatgggcttgcagaaccgaatacccaa 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  tcaagccagattccacccatgtccctggctgatcatgggcttgcagaaccgaatacccaa 799

                                                                        
Query: 571  ctcctcagggccaccagtgtcatttgggtgcacagaagtttgagaaccacagcatccttc 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798  ctcctcagggccaccagtgtcatttgggtgcacagaagtttgagaaccacagcatccttc 739

                                                                 
Query: 631  ctgcccccactgtttctcaactggagaaa-acaggctggatccctatcttgga 682
            ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 738  ctgcccccactgtttctcaactggagaaacacaggttggatccctatcttgga 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space:   721056
Effective search space used:   721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)