BAC Information

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BAC

Clone NameMSMg01-341A08
Chromosome16 (Build37)
Map Location 73,508,017 - 73,508,344
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341A08.T7 (MSMg01no341_a08.b1)MSMg01-341A08.TJ (MSMg01no341_a08.g1)
ACCAG454920AG454921
length740753
length of high quality
(start - end)
450 (46 - 495)436 (74 - 509)
definitionCHROMAT_FILE: MSMg01no341_a08.b1 PHD_FILE: MSMg01no341_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:09 2005CHROMAT_FILE: MSMg01no341_a08.g1 PHD_FILE: MSMg01no341_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAAGACAGGCAGATCTCCGAGTTCAAGATCATCTGGGATTGAA
GGCTTGGTGGCACATACCTTTGATCTGGGCCACACATTCTTCTGGAGACC
TACATAAGGACATTGGAAGAAGGAAGATTTACTCTCTCTCTCTCTCTCTT
CTTCACTTGCTTGCCCTATGGGACTGAGCAACTGTTAGATCCTGGGACTT
CCATTCACAGCTGCTGCTAACCATTGTTGGGAGTTGGGCTACAGACTGTA
AGTCATCAACAAATTCCCATACTATATAGAGACTGCTTATAAGTTCTGTG
ACTCTAGAGAACCCTGATACACCTATCTATGTTAACATTAATTATAAACT
CTCACACTGTTTACATGTACTAAGTTCTAATTGCATGTGACATGCACCTC
CTGCATAAATTATTTCTCTTATATGCTTACTTATGCATTTACTCCACTAT
GAAAGGATTTTCATTTTTATCAACAACATTTTCCTAATAGAAGTCTCAAA
GTGCCCGCATATTTTAAACTACCTCCTCCTTTACTAAAACGGGGTAATTT
ATAACAAAACTCCTAAAGGAAAAAACTGCTTCTTGGCCTTGGTCCGCGTT
CCCCGATCCGCAACTACCTCCACTTCTTTCCCGGTTTCTCTTTCCCCCTT
TTTCCTGTCCATTCATTCCTCACCTTCCCCCCTTTCCCTN
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATTTATGCAAATGAAGCATCCCCAT
CCTAGCCAATGATGTACATCCACCTTGAAACTCACTACCTACTTCCCAAA
TGTATATAGTCCTTGTTCATCCTGAATAAAATTGAGTTGTCTAGCTGAAG
CTGATCCCAGAAGTCAATCAATCCTTCAGAATTCATATTCCTAAATGATG
GGTTATTTCACTGCTGGTAAAATGAGCCAATTCAAGCCAGATTAGAATAT
ATTAAAGGCAGGTTTATTGGGAAACTACTCTTGGGTGACTTCACTGGCCG
CAAGGACCTAGGCCAGAAAAGTCACCATGGGGAGACAGGGTGGGGGACGA
GCAAGAGAGAAAGGATGTCAATGCAGAGAGAGAAGGGAAGGAGAAGAGAC
AAAGAGAGACAAAAATGTGTGGATTATATGGGGAAAAGCCTCTAGGGGAA
GGGCAGCTCAGCCCTGGGATGGCAAGTTCAGGGTTGAGGACAGGGTATAC
CAGGTACGGACTGGTGTATGCTGTGAGAAATTGGAGGTCCGGTCTGCTTT
TTAATCTAAAAATATGCCTGTGTTCCCCTTCGCTTGTGTCTCAATCCCAT
ACTAGTTCTTATTCCCTCTTTTTCTTTCCTGCTCGATCTCCATGGTTTAA
TCTATACCTATTCATCCTCCCTTCATGTCATTTTCTCCCCCTTTTTTCCC
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_a08.b1 MSMg01no341_a08.b1 CHROMAT_FILE:
MSMg01no341_a08.b1 PHD_FILE: MSMg01no341_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:09 2005
         (450 letters)



>mm_chr16_73507495_73508344
          Length = 850

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 123 agaaggaagatttactctctctctctctctcttcttcacttgcttgccctatgggactga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 agaaggaagatttactctctctctctctctcttcttcacttgcttgccctatgggactga 791

                                                                       
Query: 183 gcaactgttagatcctgggacttccattcacagctgctgctaaccattgttgggagttgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gcaactgttagatcctgggacttccattcacagctgctgctaaccattgttgggagttgg 731

                                                                       
Query: 243 gctacagactgtaagtcatcaacaaattcccatactatatagagactgcttataagttct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gctacagactgtaagtcatcaacaaattcccatactatatagagactgcttataagttct 671

                                                                       
Query: 303 gtgactctagagaaccctgatacacctatctatgttaacattaattataaactctcacac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtgactctagagaaccctgatacacctatctatgttaacattaattataaactctcacac 611

                                                                       
Query: 363 tgtttacatgtactaagttctaattgcatgtgacatgcacctcctgcataaattatttct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgtttacatgtactaagttctaattgcatgtgacatgcacctcctgcataaattatttct 551

                                       
Query: 423 cttatatgcttacttatgcatttactcc 450
           ||||||||||||||||||||||||||||
Sbjct: 550 cttatatgcttacttatgcatttactcc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)